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TISSUE THALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
134.575
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23.3 nTPM
HPA:23.3 nTPM
FANTOM5:86.4 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:99.6 nTPM
Allen mouse:0.7 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB079009
Thalamus mean intensity 134.575
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 36.261
Parafascicular thalamic nucleus 36.410
Pregeniculate nucleus 41.620
Stria terminalis 25.323
Zona incerta 75.644
Anterodorsal thalamic nucleus -
Reticular thalamic nucleus 3.941
Vental anterior thalamic nucleus -
Medial habenular nucleus 99.939
Laterodorsal thalamic area 34.117
Paraventricular thalamic nucleus 107.135
Central medial thalamic area 71.346
Ventral lateral thalamic area -
Ventral medial thalamic area 33.389
Lateral habenulal nucleus 47.381
Ventral posterior thalamus 22.804
Anterior pretactal nucleus 28.280
Retromammillary nucleus 53.641

THALAMUS - HPA Brain RNA-seq
Max nTPM 23.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 16.0
2032 Female, age 42, unknown 22.3
2497 Male, age 66, unknown 15.7
2396 Male, age 61, right hemisphere 9.9
Centromedial thalamic nucleus
nTPM: 17.5
2401 Male, age 76, right hemisphere 28.8
2279 Female, age 85, left hemisphere 6.1
Habenula
nTPM: 20.2
1957 Male, age 80, both hemispheres 26.5
2203 Male, age 61, left hemisphere 22.3
2252 Male, age 62, unknown 17.2
2276 Male, age 66, unknown 14.8
Lateral geniculate body
nTPM: 23.2
2106 Female, age 67, right hemisphere 34.9
2575 Female, age 94, right hemisphere 30.5
1953 Male, age 62, unknown 27.9
2399 Male, age 61, left hemisphere 24.5
2035 Female, age 72, unknown 21.9
2857 Male, age 74, right hemisphere 16.3
2841 Male, age 80, both hemispheres 15.8
2659 Male, age 66, unknown 13.7
Lateral thalamic nuclei
nTPM: 18.7
2765 Female, age 67, both hemispheres 23.6
1903 Male, age 76, left hemisphere 22.7
2573 Female, age 94, left hemisphere 18.3
2577 Male, age 74, both hemispheres 17.2
2661 Female, age 72, unknown 11.8
Medial dorsal thalamic nucleus
nTPM: 21.1
2572 Female, age 94, right hemisphere 37.9
1859 Male, age 76, both hemispheres 25.1
2498 Male, age 66, unknown 23.9
2026 Male, age 62, unknown 23.2
2283 Male, age 80, right hemisphere 23.2
1930 Female, age 42, unknown 20.5
2402 Female, age 67, both hemispheres 20.1
2492 Male, age 75, right hemisphere 20.1
1971 Male, age 61, right hemisphere 19.9
1810 Male, age 48, unknown 18.4
2039 Female, age 72, unknown 17.3
2576 Male, age 74, both hemispheres 12.8
2660 Female, age 72, unknown 12.0
Medial geniculate body
nTPM: 20.1
1811 Female, age 42, unknown 30.5
2650 Female, age 94, left hemisphere 26.9
2657 Male, age 74, right hemisphere 20.4
2207 Male, age 80, right hemisphere 18.5
2049 Male, age 76, both hemispheres 17.7
2217 Female, age 72, unknown 15.7
2571 Male, age 75, right hemisphere 11.1
Nucleus reuniens
nTPM: 14.0
2212 Female, age 67, left hemisphere 20.2
2205 Male, age 80, left hemisphere 14.9
2210 Female, age 85, left hemisphere 6.8
Nucleus rhomboideus
nTPM: 12.5
2206 Male, age 80, both hemispheres 21.0
2213 Female, age 67, left hemisphere 11.2
2280 Female, age 85, left hemisphere 5.5
Posterior thalamic nucleus
nTPM: 23.3
2649 Female, age 94, both hemispheres 37.7
2266 Male, age 76, right hemisphere 19.9
2495 Female, age 67, right hemisphere 19.4
2655 Male, age 74, right hemisphere 16.3
Pulvinar
nTPM: 22.1
1932 Male, age 80, right hemisphere 25.9
2496 Female, age 67, right hemisphere 25.9
1972 Male, age 62, unknown 24.7
1929 Male, age 48, unknown 23.8
1899 Female, age 42, unknown 23.2
2398 Male, age 61, left hemisphere 22.3
2214 Male, age 76, right hemisphere 21.5
2499 Male, age 66, unknown 20.6
2724 Male, age 74, right hemisphere 18.8
2582 Female, age 72, unknown 14.3
Subthalamic nucleus
nTPM: 15.3
2658 Male, age 74, both hemispheres 18.8
2406 Female, age 72, unknown 18.7
2282 Male, age 61, both hemispheres 16.3
2275 Male, age 66, unknown 16.0
2124 Male, age 62, unknown 14.8
2779 Female, age 42, unknown 14.6
2056 Female, age 72, unknown 12.5
2216 Male, age 48, unknown 10.4
Ventral posterolateral thalamic nucleus
nTPM: 17.7
2197 Male, age 80, both hemispheres 22.1
2397 Male, age 61, right hemisphere 20.7
2740 Male, age 76, right hemisphere 19.4
2570 Male, age 75, right hemisphere 19.2
2578 Male, age 74, both hemispheres 16.1
2581 Female, age 72, unknown 8.7
Ventral posteromedial thalamic nucleus
nTPM: 20.1
2758 Male, age 80, both hemispheres 25.5
2202 Male, age 61, left hemisphere 22.6
2281 Male, age 75, right hemisphere 18.5
2653 Male, age 74, both hemispheres 17.0
2127 Male, age 76, right hemisphere 16.7
Ventral thalamic nuclei
nTPM: 18.4
1860 Male, age 76, both hemispheres 25.6
1845 Male, age 48, unknown 25.3
1912 Female, age 42, unknown 20.0
2285 Male, age 62, unknown 19.9
2580 Male, age 66, unknown 18.1
2204 Male, age 80, both hemispheres 14.5
2652 Male, age 74, left hemisphere 14.3
2291 Female, age 72, unknown 14.1
2858 Female, age 72, unknown 13.7
Ventromedial nucleus
nTPM: 19.6
1982 Female, age 72, unknown 20.1
1822 Female, age 42, unknown 19.2
Zona incerta
nTPM: 15.4
2215 Male, age 66, unknown 18.6
2822 Male, age 74, right hemisphere 17.0
2403 Male, age 62, unknown 15.8
2208 Male, age 80, right hemisphere 15.4
2663 Female, age 72, unknown 10.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 86.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 86.4
FF:10154-103A1 76 years, female 86.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 59.8
Pig sample Sample description nTPM
Thalamus
nTPM: 59.8
Samples: 4

Max nTPM: 74.4
Min nTPM: 40.1
Sample A Female 71.7
Sample B Female 52.9
Sample C Male 74.4
Sample D Male 40.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 99.6
Samples: 4

Max nTPM: 104.8
Min nTPM: 93.1
Sample A Male 95.6
Sample B Male 104.8
Sample C Female 93.1
Sample D Female 104.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.7
69169714 Antisense, RP_050321_04_B01, Mouse strain C57BL/6J (56 days, male) 0.7

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by the Knut & Alice Wallenberg Foundation.