We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PREP
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PREP
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:15.4 nTPM
GTEx:15.4 nTPM
FANTOM5:34.1 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:7.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 15.4
Samples: 105

Max nTPM: 22.1
Min nTPM: 10.3
Std nTPM: 2.3
Median nTPM: 0.0
490_1 67 years, female 22.1
379_1 60 years, male 21.3
375_1 74 years, female 20.9
43_1 64 years, female 20.5
414_1 84 years, female 20.4
491_1 89 years, female 20.4
316_1 62 years, male 19.2
347_1 72 years, male 19.2
468_1 89 years, male 18.9
246_1 77 years, male 18.7
319_1 81 years, male 18.2
237_1 82 years, male 18.1
162_1 79 years, female 17.8
447_1 81 years, male 17.6
322_1 76 years, male 17.4
349_1 83 years, male 17.3
386_1 76 years, male 17.3
9_1 66 years, female 17.2
466_1 57 years, female 17.2
415_1 77 years, female 17.1
145_1 84 years, male 17.0
149_1 88 years, male 17.0
217_1 76 years, male 17.0
413_1 59 years, female 16.9
32_1 67 years, male 16.8
120_1 70 years, female 16.8
126_1 63 years, male 16.8
119_1 70 years, female 16.7
254_1 77 years, female 16.6
355_1 70 years, female 16.6
425_1 59 years, female 16.6
2_1 77 years, female 16.5
315_1 62 years, female 16.5
526_1 61 years, male 16.4
142_1 61 years, female 16.3
266_1 85 years, male 16.3
115_1 83 years, male 16.2
243_1 75 years, male 16.2
311_1 78 years, male 16.2
307_1 66 years, female 16.1
35_1 74 years, female 16.0
265_1 87 years, male 16.0
324_1 76 years, male 16.0
6_1 73 years, female 15.9
117_1 61 years, male 15.9
384_1 83 years, male 15.9
173_1 67 years, male 15.8
503_1 68 years, male 15.7
518_1 75 years, female 15.7
177_1 74 years, male 15.6
17_1 71 years, male 15.5
354_1 81 years, female 15.5
41_1 94 years, female 15.4
396_1 62 years, male 15.4
139_1 64 years, female 15.3
189_1 76 years, male 15.3
318_1 68 years, male 15.3
389_1 86 years, female 15.1
109_1 81 years, female 15.0
291_1 76 years, male 15.0
350_1 84 years, female 14.8
352_1 62 years, male 14.8
18_1 88 years, male 14.6
499_1 55 years, female 14.6
42_1 85 years, male 14.5
172_1 72 years, female 14.5
517_1 88 years, male 14.5
229_1 69 years, female 14.4
313_1 79 years, female 14.4
377_1 82 years, female 14.4
251_1 78 years, male 14.3
348_1 84 years, male 14.2
405_1 91 years, male 14.1
286_1 68 years, female 14.0
406_1 79 years, male 14.0
81_1 67 years, male 13.9
153_1 70 years, female 13.9
99_1 64 years, male 13.8
288_1 66 years, female 13.8
404_1 82 years, female 13.8
292_1 71 years, male 13.7
320_1 89 years, female 13.7
353_1 82 years, female 13.6
163_1 78 years, male 13.5
218_1 71 years, female 13.4
356_1 87 years, female 13.4
394_1 75 years, female 13.3
480_1 63 years, male 13.3
501_1 88 years, male 13.2
308_1 70 years, female 13.1
321_1 62 years, female 13.0
351_1 91 years, male 13.0
506_1 65 years, male 12.9
4_1 88 years, female 12.7
89_1 63 years, male 12.7
295_1 61 years, female 12.5
335_1 73 years, female 12.5
452_1 88 years, female 12.2
264_1 73 years, female 12.1
293_1 68 years, female 12.1
314_1 67 years, male 11.7
376_1 75 years, female 11.2
495_1 57 years, female 11.1
137_1 83 years, male 10.5
317_1 60 years, male 10.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 34.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 34.1
FF:10030-101E3 24-65 years, mixed 34.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.3
Pig sample Sample description nTPM
Retina
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 21.2
Sample A Female 21.9
Sample B Female 24.8
Sample C Male 25.1
Sample D Male 21.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.9
Mouse sample Sample description nTPM
Retina
nTPM: 7.9
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 7.8
Sample C Female 7.9
Sample D Female 8.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.