MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:9.4 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:37.0 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.9
1870 Female, age 42, unknown 9.9
2411 Female, age 72, unknown 9.9
1827 Male, age 72, unknown 9.4
2666 Male, age 74, left hemisphere 9.0
1830 Male, age 51, unknown 8.8
1833 Male, age 53, unknown 8.8
2828 Female, age 72, unknown 8.8
2019 Male, age 18, unknown 8.4
2219 Male, age 76, both hemispheres 8.2
2586 Male, age 75, left hemisphere 7.8
Dorsal raphe nucleus
nTPM: 9.0
2750 Male, age 76, both hemispheres 9.7
2047 Male, age 72, unknown 9.1
2298 Female, age 72, unknown 9.1
2016 Female, age 72, unknown 8.6
1828 Male, age 53, unknown 8.5
Inferior colliculus
nTPM: 8.9
2097 Female, age 72, unknown 10.4
1890 Male, age 53, unknown 8.7
1848 Female, age 42, unknown 8.4
2849 Male, age 72, unknown 7.9
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Pedunculopontine tegmental nucleus
nTPM: 9.2
1921 Female, age 85, both hemispheres 9.3
2334 Male, age 80, both hemispheres 9.3
2338 Male, age 61, both hemispheres 9.0
Periaquaductal grey, anterior
nTPM: 9.6
2502 Female, age 75, unknown 10.4
1947 Male, age 18, unknown 9.7
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 8.9
1840 Male, age 53, unknown 9.2
2850 Male, age 76, both hemispheres 8.8
2464 Female, age 72, unknown 8.7
1831 Male, age 72, unknown 8.6
Periaquaductal grey, lateral
nTPM: 8.5
2053 Male, age 18, unknown 9.4
2272 Male, age 74, both hemispheres 8.4
2140 Male, age 76, both hemispheres 7.6
Pretectal area
nTPM: 9.4
1816 Male, age 51, unknown 10.1
1817 Female, age 42, unknown 9.9
2667 Female, age 75, unknown 9.9
1815 Male, age 53, unknown 9.8
1944 Female, age 72, unknown 9.6
2007 Male, age 72, unknown 9.4
2825 Male, age 18, unknown 9.2
2224 Female, age 72, unknown 9.1
2316 Male, age 76, right hemisphere 9.1
2407 Male, age 75, both hemispheres 9.0
2273 Male, age 74, both hemispheres 8.0
Red nucleus
nTPM: 9.4
1821 Female, age 72, unknown 11.9
1954 Female, age 42, unknown 10.6
1904 Male, age 53, unknown 10.0
1865 Male, age 51, unknown 9.4
2227 Male, age 72, unknown 9.4
2503 Female, age 72, unknown 9.1
2588 Male, age 74, left hemisphere 9.1
2725 Female, age 75, unknown 9.1
2769 Male, age 72, unknown 9.0
2584 Male, age 75, left hemisphere 8.8
2823 Male, age 76, right hemisphere 8.6
2785 Male, age 18, unknown 8.3
Substantia nigra
nTPM: 10.2
1916 Female, age 42, unknown 12.0
2241 Male, age 72, unknown 11.7
1889 Female, age 72, unknown 10.5
2409 Female, age 72, unknown 10.2
1851 Male, age 51, unknown 10.1
2699 Male, age 18, unknown 10.1
2665 Male, age 74, both hemispheres 9.8
1941 Male, age 53, unknown 9.7
2590 Female, age 75, unknown 9.0
2583 Male, age 75, right hemisphere 8.6
Superior colliculus
nTPM: 8.9
1796 Male, age 53, unknown 9.6
2087 Female, age 72, unknown 9.6
2261 Male, age 18, unknown 9.5
1895 Male, age 76, right hemisphere 9.0
1913 Female, age 42, unknown 9.0
2668 Female, age 75, unknown 9.0
2587 Male, age 74, left hemisphere 8.7
1839 Male, age 51, unknown 8.6
1995 Male, age 72, unknown 8.5
2664 Male, age 75, both hemispheres 7.1
Ventral tegmental area
nTPM: 9.7
2410 Female, age 72, unknown 11.0
2218 Male, age 76, both hemispheres 10.3
1942 Male, age 51, unknown 10.2
1915 Female, age 42, unknown 9.7
2021 Male, age 53, unknown 8.7
2223 Female, age 72, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 14.7
Min nTPM: 6.4
Std nTPM: 1.6
Median nTPM: 9.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 13.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 12.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 12.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 12.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.6
Pig sample Sample description nTPM
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 43.5
Min nTPM: 23.2
Sample A Female 43.5
Sample B Female 25.5
Sample C Male 34.1
Sample D Male 23.2
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 24.2
Min nTPM: 20.7
Sample B Female 24.2
Sample C Male 23.1
Sample D Male 20.7
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 28.6
Min nTPM: 22.0
Sample A Female 28.1
Sample B Female 22.0
Sample C Male 24.6
Sample D Male 28.6
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 32.6
Min nTPM: 23.1
Sample A Female 28.6
Sample B Female 23.1
Sample C Male 32.6
Sample D Male 27.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 39.3
Min nTPM: 34.4
Sample A Male 34.4
Sample B Male 36.8
Sample C Female 39.3
Sample D Female 37.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71992085 Antisense, RP_051012_04_B05, Mouse strain C57BL/6J (56 days, male) 1.3
71609045 Antisense, RP_050712_01_D05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.