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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:15.9 nTPM
HPA:15.9 nTPM
GTEx:12.0 nTPM
FANTOM5:61.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA050603
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 15.9
overview
Male, age 65
Small intestine sample 232
nTPM: 16
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 16.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 15.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 15.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 12.0
Samples: 187

Max nTPM: 23.0
Min nTPM: 6.0
Std nTPM: 2.3
Median nTPM: 11.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 23.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 18.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 18.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 17.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 16.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 16.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 16.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 16.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 16.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 15.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 15.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 15.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 15.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 15.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 14.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 14.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 14.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 14.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 14.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 14.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 14.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 14.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 14.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 14.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 14.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 14.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 14.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 14.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 14.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 14.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 14.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 14.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 14.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 13.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 13.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 13.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 13.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 13.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 13.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 13.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 13.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 13.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 13.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 13.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 13.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 13.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 13.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 13.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 13.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 12.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 12.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 12.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 12.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 12.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 12.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 12.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 12.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 12.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 12.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 12.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 12.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 12.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 12.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 12.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 12.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 12.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 12.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 12.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 12.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 12.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 12.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 12.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 12.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 12.2
GTEX-1192X-2526-SM-59868 50-59 years, male 12.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 12.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 12.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 12.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 12.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 12.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 12.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 12.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 12.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 11.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 11.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 11.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 11.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 11.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 11.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 11.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 11.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 11.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 11.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 11.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 11.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 11.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 11.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 11.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 11.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 11.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 11.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 11.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 11.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 11.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 11.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 11.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 11.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 11.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 11.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 11.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 11.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 11.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 11.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 11.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 11.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 11.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 11.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 11.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 11.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 11.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 11.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 11.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 11.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 11.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 11.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 11.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 11.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 10.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 10.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 10.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 10.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 10.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 10.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 10.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 10.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 10.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 10.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 10.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 10.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 10.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 10.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 10.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 10.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 10.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 10.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 10.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 10.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 9.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 9.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 9.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 9.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 9.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 9.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 9.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 9.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 9.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 9.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 9.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 9.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 9.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 9.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 9.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 8.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 8.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 8.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 8.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 8.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 8.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 7.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 7.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 7.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 6.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 61.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 61.2
FF:10024-101D6 15,40,85 years, mixed 61.2

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