BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:2.3 nTPM
FANTOM5:35.7 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:13.1 nTPM
Allen mouse:3.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007625
Glial cells High
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
1857 Female, age 85, left hemisphere 4.4
2288 Male, age 75, left hemisphere 3.6
1781 Male, age 74, unknown 1.2
1854 Male, age 80, left hemisphere 0.8
2290 Female, age 72, unknown 0.2
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 1.3
2392 Female, age 94, both hemispheres 4.9
2491 Male, age 75, both hemispheres 2.8
2196 Female, age 79, unknown 1.7
2645 Female, age 72, unknown 1.6
2568 Male, age 61, both hemispheres 0.8
2284 Female, age 91, both hemispheres 0.4
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 1.9
2567 Female, age 72, unknown 3.4
1996 Male, age 80, right hemisphere 2.5
2395 Male, age 75, both hemispheres 1.7
2772 Female, age 79, unknown 1.3
2646 Male, age 61, right hemisphere 0.9
Globus pallidus, internus
nTPM: 2.9
2566 Female, age 72, unknown 5.8
2037 Male, age 80, right hemisphere 4.0
2287 Male, age 75, right hemisphere 3.7
2483 Female, age 94, right hemisphere 2.8
1818 Male, age 74, unknown 2.7
2778 Female, age 91, both hemispheres 1.0
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.7
2286 Male, age 75, left hemisphere 3.5
2391 Female, age 94, left hemisphere 1.5
1783 Male, age 74, unknown 1.1
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.1
2484 Female, age 94, left hemisphere 3.8
2569 Male, age 61, both hemispheres 3.4
2821 Male, age 75, both hemispheres 0.6
2393 Male, age 80, right hemisphere 0.5
Nucleus of the diagonal band
nTPM: 4.4
2029 Male, age 61, right hemisphere 7.5
2775 Male, age 80, right hemisphere 7.4
1812 Female, age 91, both hemispheres 5.1
2195 Female, age 85, both hemispheres 1.8
1979 Male, age 74, unknown 0.4
Olfactory tubercle
nTPM: 2.9
1846 Male, age 80, right hemisphere 5.2
1998 Female, age 91, both hemispheres 3.1
2856 Male, age 75, right hemisphere 2.7
2487 Female, age 94, left hemisphere 0.4
Putamen
nTPM: 0.9
2647 Male, age 75, left hemisphere 1.9
1937 Female, age 91, right hemisphere 1.6
1838 Male, age 80, right hemisphere 1.4
2482 Female, age 94, left hemisphere 1.0
2466 Female, age 79, unknown 0.7
1829 Male, age 74, unknown 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 3.2
2009 Female, age 91, both hemispheres 5.1
2031 Female, age 72, unknown 4.7
1960 Male, age 74, unknown 4.4
2394 Male, age 61, left hemisphere 3.6
2059 Female, age 85, both hemispheres 2.5
2629 Female, age 94, right hemisphere 2.3
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.3
Samples: 246

Max nTPM: 7.8
Min nTPM: 0.7
Std nTPM: 0.8
Median nTPM: 2.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 7.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 4.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 4.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 4.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 4.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 4.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 3.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 3.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 6.0
Min nTPM: 0.1
Std nTPM: 0.9
Median nTPM: 1.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6.0
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 5.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 5.2
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 4.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 4.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 4.3
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 4.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 4.1
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 4.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 3.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 3.8
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Brain - Putamen (basal ganglia)
Average nTPM: 2.1
Samples: 205

Max nTPM: 4.5
Min nTPM: 0.3
Std nTPM: 0.7
Median nTPM: 2.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 4.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 4.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 4.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 4.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 3.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 3.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 3.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 3.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 3.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 3.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.8
FF:10164-103B2 76 years, female 29.8
Globus pallidus
Scaled Tags Per Million: 35.7
FF:10161-103A8 76 years, female 42.2
FF:10175-103C4 60 years, female 29.2
Nucleus accumbens
Scaled Tags Per Million: 27.6
FF:10037-101F1 23-56 years, mixed 27.6
Putamen
Scaled Tags Per Million: 35.2
FF:10176-103C5 60 years, female 35.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Caudate
nTPM: 14.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 16.0
Sample C Male 14.6
Sample D Male 14.4
Putamen
nTPM: 17.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 15.3
Sample A Female 20.6
Sample B Female 15.3
Sample C Male 15.3
Sample D Male 18.3
Septum
nTPM: 17.9
Samples: 4

Max nTPM: 19.0
Min nTPM: 16.4
Sample A Female 18.3
Sample B Female 17.8
Sample C Male 19.0
Sample D Male 16.4
Ventral pallidum
nTPM: 19.3
Samples: 4

Max nTPM: 21.6
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 19.0
Sample C Male 21.1
Sample D Male 21.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.9
Sample A Male 13.3
Sample B Male 13.9
Sample C Female 13.2
Sample D Female 11.9
Septum
nTPM: 12.3
Samples: 4

Max nTPM: 14.7
Min nTPM: 10.8
Sample A Male 14.7
Sample B Male 10.8
Sample C Female 11.4
Sample D Female 12.3
Ventral forebrain
nTPM: 13.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.3
Sample A Male 13.5
Sample B Male 14.4
Sample C Female 11.3
Sample D Female 13.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
71724870 Antisense, RP_050921_03_F02, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 3.3
71724870 Antisense, RP_050921_03_F02, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

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