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AKR1B1
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TISSUE PRIMARY DATA THALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.7 nTPM
HPA:88.7 nTPM
FANTOM5:39.5 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:70.8 nTPM
Allen mouse:2.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 88.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 84.8
2396 Male, age 61, right hemisphere 91.7
2032 Female, age 42, unknown 82.3
2497 Male, age 66, unknown 80.5
Centromedial thalamic nucleus
nTPM: 80.0
2401 Male, age 76, right hemisphere 82.5
2279 Female, age 85, left hemisphere 77.5
Habenula
nTPM: 88.7
1957 Male, age 80, both hemispheres 93.3
2276 Male, age 66, unknown 87.3
2203 Male, age 61, left hemisphere 87.1
2252 Male, age 62, unknown 87.1
Lateral geniculate body
nTPM: 86.3
2106 Female, age 67, right hemisphere 94.4
2035 Female, age 72, unknown 90.1
2399 Male, age 61, left hemisphere 87.9
1953 Male, age 62, unknown 87.6
2575 Female, age 94, right hemisphere 84.5
2841 Male, age 80, both hemispheres 83.0
2857 Male, age 74, right hemisphere 82.9
2659 Male, age 66, unknown 80.4
Lateral thalamic nuclei
nTPM: 83.9
2573 Female, age 94, left hemisphere 88.9
2765 Female, age 67, both hemispheres 88.0
1903 Male, age 76, left hemisphere 83.5
2577 Male, age 74, both hemispheres 82.4
2661 Female, age 72, unknown 76.7
Medial dorsal thalamic nucleus
nTPM: 86.9
2572 Female, age 94, right hemisphere 100.0
1971 Male, age 61, right hemisphere 93.2
2498 Male, age 66, unknown 92.1
2492 Male, age 75, right hemisphere 88.0
1930 Female, age 42, unknown 87.2
2026 Male, age 62, unknown 86.9
1810 Male, age 48, unknown 85.9
2039 Female, age 72, unknown 85.3
2402 Female, age 67, both hemispheres 85.1
2576 Male, age 74, both hemispheres 84.7
1859 Male, age 76, both hemispheres 83.2
2283 Male, age 80, right hemisphere 82.4
2660 Female, age 72, unknown 75.7
Medial geniculate body
nTPM: 83.3
2650 Female, age 94, left hemisphere 91.3
2049 Male, age 76, both hemispheres 85.9
1811 Female, age 42, unknown 83.6
2657 Male, age 74, right hemisphere 82.8
2571 Male, age 75, right hemisphere 81.5
2207 Male, age 80, right hemisphere 79.9
2217 Female, age 72, unknown 77.9
Nucleus reuniens
nTPM: 82.6
2212 Female, age 67, left hemisphere 91.1
2205 Male, age 80, left hemisphere 79.0
2210 Female, age 85, left hemisphere 77.7
Nucleus rhomboideus
nTPM: 83.0
2213 Female, age 67, left hemisphere 89.2
2206 Male, age 80, both hemispheres 83.6
2280 Female, age 85, left hemisphere 76.2
Posterior thalamic nucleus
nTPM: 84.9
2649 Female, age 94, both hemispheres 96.4
2655 Male, age 74, right hemisphere 83.6
2495 Female, age 67, right hemisphere 80.3
2266 Male, age 76, right hemisphere 79.3
Pulvinar
nTPM: 83.3
1972 Male, age 62, unknown 90.1
2499 Male, age 66, unknown 89.4
2398 Male, age 61, left hemisphere 88.1
1899 Female, age 42, unknown 85.0
1929 Male, age 48, unknown 83.5
1932 Male, age 80, right hemisphere 81.9
2214 Male, age 76, right hemisphere 80.2
2496 Female, age 67, right hemisphere 78.5
2582 Female, age 72, unknown 78.3
2724 Male, age 74, right hemisphere 77.8
Subthalamic nucleus
nTPM: 87.3
2658 Male, age 74, both hemispheres 94.0
2406 Female, age 72, unknown 93.6
2124 Male, age 62, unknown 89.4
2779 Female, age 42, unknown 89.4
2282 Male, age 61, both hemispheres 85.6
2056 Female, age 72, unknown 84.8
2275 Male, age 66, unknown 82.9
2216 Male, age 48, unknown 78.7
Ventral posterolateral thalamic nucleus
nTPM: 82.7
2397 Male, age 61, right hemisphere 90.5
2740 Male, age 76, right hemisphere 86.7
2570 Male, age 75, right hemisphere 82.9
2197 Male, age 80, both hemispheres 81.4
2578 Male, age 74, both hemispheres 80.2
2581 Female, age 72, unknown 74.5
Ventral posteromedial thalamic nucleus
nTPM: 82.1
2202 Male, age 61, left hemisphere 85.6
2281 Male, age 75, right hemisphere 83.4
2758 Male, age 80, both hemispheres 81.2
2653 Male, age 74, both hemispheres 81.1
2127 Male, age 76, right hemisphere 79.4
Ventral thalamic nuclei
nTPM: 82.0
1845 Male, age 48, unknown 90.6
2580 Male, age 66, unknown 85.4
1912 Female, age 42, unknown 85.1
1860 Male, age 76, both hemispheres 83.4
2285 Male, age 62, unknown 80.4
2291 Female, age 72, unknown 80.2
2652 Male, age 74, left hemisphere 77.9
2204 Male, age 80, both hemispheres 77.7
2858 Female, age 72, unknown 76.7
Ventromedial nucleus
nTPM: 86.2
1982 Female, age 72, unknown 88.5
1822 Female, age 42, unknown 83.9
Zona incerta
nTPM: 81.7
2822 Male, age 74, right hemisphere 91.7
2215 Male, age 66, unknown 84.9
2403 Male, age 62, unknown 79.8
2208 Male, age 80, right hemisphere 78.5
2663 Female, age 72, unknown 73.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 39.5
FF:10154-103A1 76 years, female 39.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.5
Pig sample Sample description nTPM
Thalamus
nTPM: 33.5
Samples: 4

Max nTPM: 44.2
Min nTPM: 25.5
Sample A Female 44.2
Sample B Female 25.5
Sample C Male 33.8
Sample D Male 30.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 70.8
Samples: 4

Max nTPM: 79.0
Min nTPM: 64.1
Sample A Male 64.1
Sample B Male 69.7
Sample C Female 79.0
Sample D Female 70.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.5
73834104 Antisense, RP_050725_02_F02, Mouse strain C57BL/6J (56 days, male) 2.5
70813922 Antisense, RP_050725_02_F02, Mouse strain C57BL/6J (56 days, male) 1.8

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