MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:71.4 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:53.7 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2019 Male, age 18, unknown 30.6
2586 Male, age 75, left hemisphere 29.9
2666 Male, age 74, left hemisphere 29.6
1870 Female, age 42, unknown 29.5
2411 Female, age 72, unknown 29.3
1830 Male, age 51, unknown 29.2
1833 Male, age 53, unknown 28.5
1827 Male, age 72, unknown 28.2
2828 Female, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 25.0
Dorsal raphe nucleus
nTPM: 26.5
2750 Male, age 76, both hemispheres 28.9
1828 Male, age 53, unknown 27.1
2047 Male, age 72, unknown 26.2
2016 Female, age 72, unknown 25.4
2298 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 25.9
1890 Male, age 53, unknown 26.6
2097 Female, age 72, unknown 26.2
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Pedunculopontine tegmental nucleus
nTPM: 27.9
2338 Male, age 61, both hemispheres 29.2
2334 Male, age 80, both hemispheres 28.0
1921 Female, age 85, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 26.2
2502 Female, age 75, unknown 27.0
1795 Male, age 51, unknown 25.8
1947 Male, age 18, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 25.2
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.6
2850 Male, age 76, both hemispheres 25.5
1840 Male, age 53, unknown 23.7
Periaquaductal grey, lateral
nTPM: 25.8
2272 Male, age 74, both hemispheres 26.5
2140 Male, age 76, both hemispheres 26.3
2053 Male, age 18, unknown 24.6
Pretectal area
nTPM: 27.3
2007 Male, age 72, unknown 29.4
1817 Female, age 42, unknown 29.3
1815 Male, age 53, unknown 28.9
1816 Male, age 51, unknown 27.8
1944 Female, age 72, unknown 27.0
2407 Male, age 75, both hemispheres 26.9
2667 Female, age 75, unknown 26.7
2273 Male, age 74, both hemispheres 26.6
2316 Male, age 76, right hemisphere 26.6
2825 Male, age 18, unknown 26.1
2224 Female, age 72, unknown 25.1
Red nucleus
nTPM: 30.8
2785 Male, age 18, unknown 32.1
2227 Male, age 72, unknown 31.8
1821 Female, age 72, unknown 31.7
1865 Male, age 51, unknown 31.6
1904 Male, age 53, unknown 31.3
1954 Female, age 42, unknown 31.1
2503 Female, age 72, unknown 30.9
2769 Male, age 72, unknown 30.8
2588 Male, age 74, left hemisphere 30.7
2823 Male, age 76, right hemisphere 30.1
2725 Female, age 75, unknown 29.6
2584 Male, age 75, left hemisphere 28.4
Substantia nigra
nTPM: 27.6
1941 Male, age 53, unknown 28.8
1851 Male, age 51, unknown 28.5
2583 Male, age 75, right hemisphere 28.3
2409 Female, age 72, unknown 28.2
2699 Male, age 18, unknown 28.0
1889 Female, age 72, unknown 27.9
1916 Female, age 42, unknown 27.8
2590 Female, age 75, unknown 27.2
2665 Male, age 74, both hemispheres 25.9
2241 Male, age 72, unknown 25.1
Superior colliculus
nTPM: 27.5
1913 Female, age 42, unknown 29.3
1995 Male, age 72, unknown 28.5
2664 Male, age 75, both hemispheres 28.5
2668 Female, age 75, unknown 28.4
2261 Male, age 18, unknown 27.3
2087 Female, age 72, unknown 27.1
2587 Male, age 74, left hemisphere 27.0
1839 Male, age 51, unknown 26.3
1796 Male, age 53, unknown 26.1
1895 Male, age 76, right hemisphere 26.1
Ventral tegmental area
nTPM: 27.5
2223 Female, age 72, unknown 30.0
2410 Female, age 72, unknown 28.0
1915 Female, age 42, unknown 27.1
2218 Male, age 76, both hemispheres 26.9
1942 Male, age 51, unknown 26.5
2021 Male, age 53, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.4
Samples: 139

Max nTPM: 152.1
Min nTPM: 41.0
Std nTPM: 16.2
Median nTPM: 70.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 152.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 149.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 112.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 104.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 103.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 103.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 98.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 97.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 97.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.2
FF:10158-103A5 76 years, female 143.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 44.6
Min nTPM: 23.0
Sample A Female 44.6
Sample B Female 23.8
Sample C Male 32.0
Sample D Male 23.0
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 25.6
Min nTPM: 19.7
Sample B Female 22.3
Sample C Male 25.6
Sample D Male 19.7
Substantia nigra
nTPM: 30.3
Samples: 4

Max nTPM: 35.3
Min nTPM: 25.6
Sample A Female 35.3
Sample B Female 25.6
Sample C Male 32.0
Sample D Male 28.3
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 33.2
Min nTPM: 26.7
Sample A Female 32.6
Sample B Female 33.2
Sample C Male 31.5
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.7
Samples: 4

Max nTPM: 55.4
Min nTPM: 52.3
Sample A Male 54.5
Sample B Male 52.6
Sample C Female 52.3
Sample D Female 55.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
70616018 Antisense, RP_050725_01_D11, Mouse strain C57BL/6J (56 days, male) 5.8
564759 Antisense, RP_040826_01_D04, Mouse strain C57BL/6J (56 days, male) 2.7
70919382 Antisense, RP_050713_01_C01, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.