MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA:16.1 nTPM
GTEx:16.3 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:20.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2019 Male, age 18, unknown 16.7
1870 Female, age 42, unknown 16.5
2666 Male, age 74, left hemisphere 16.2
2411 Female, age 72, unknown 15.6
1830 Male, age 51, unknown 15.5
1827 Male, age 72, unknown 15.3
1833 Male, age 53, unknown 15.2
2219 Male, age 76, both hemispheres 15.1
2586 Male, age 75, left hemisphere 14.8
2828 Female, age 72, unknown 14.4
Dorsal raphe nucleus
nTPM: 14.7
1828 Male, age 53, unknown 15.2
2016 Female, age 72, unknown 15.0
2750 Male, age 76, both hemispheres 14.9
2047 Male, age 72, unknown 14.7
2298 Female, age 72, unknown 13.4
Inferior colliculus
nTPM: 15.3
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 15.5
1848 Female, age 42, unknown 15.2
2849 Male, age 72, unknown 14.9
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 15.2
2334 Male, age 80, both hemispheres 15.8
1921 Female, age 85, both hemispheres 15.2
2338 Male, age 61, both hemispheres 14.5
Periaquaductal grey, anterior
nTPM: 14.5
1947 Male, age 18, unknown 15.4
2502 Female, age 75, unknown 14.2
1795 Male, age 51, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 14.3
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 14.3
1840 Male, age 53, unknown 14.1
2850 Male, age 76, both hemispheres 13.7
Periaquaductal grey, lateral
nTPM: 14.2
2272 Male, age 74, both hemispheres 15.3
2053 Male, age 18, unknown 14.2
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 15.5
1944 Female, age 72, unknown 17.1
1816 Male, age 51, unknown 16.6
1817 Female, age 42, unknown 16.6
2007 Male, age 72, unknown 16.1
2407 Male, age 75, both hemispheres 15.7
2667 Female, age 75, unknown 15.5
2273 Male, age 74, both hemispheres 15.4
1815 Male, age 53, unknown 14.6
2825 Male, age 18, unknown 14.6
2224 Female, age 72, unknown 14.2
2316 Male, age 76, right hemisphere 14.1
Red nucleus
nTPM: 16.1
1821 Female, age 72, unknown 18.0
1865 Male, age 51, unknown 17.5
2725 Female, age 75, unknown 16.7
1954 Female, age 42, unknown 16.5
2823 Male, age 76, right hemisphere 16.2
1904 Male, age 53, unknown 16.0
2227 Male, age 72, unknown 16.0
2503 Female, age 72, unknown 15.8
2588 Male, age 74, left hemisphere 15.5
2769 Male, age 72, unknown 15.5
2785 Male, age 18, unknown 15.4
2584 Male, age 75, left hemisphere 14.7
Substantia nigra
nTPM: 15.8
1941 Male, age 53, unknown 17.8
1889 Female, age 72, unknown 16.4
2699 Male, age 18, unknown 16.0
2241 Male, age 72, unknown 15.8
2583 Male, age 75, right hemisphere 15.8
1851 Male, age 51, unknown 15.7
2590 Female, age 75, unknown 15.5
1916 Female, age 42, unknown 15.4
2665 Male, age 74, both hemispheres 15.1
2409 Female, age 72, unknown 14.6
Superior colliculus
nTPM: 15.0
2587 Male, age 74, left hemisphere 16.5
1895 Male, age 76, right hemisphere 15.8
1913 Female, age 42, unknown 15.2
2087 Female, age 72, unknown 15.0
2668 Female, age 75, unknown 14.9
1995 Male, age 72, unknown 14.6
2664 Male, age 75, both hemispheres 14.5
1796 Male, age 53, unknown 14.3
1839 Male, age 51, unknown 14.3
2261 Male, age 18, unknown 14.3
Ventral tegmental area
nTPM: 15.2
2410 Female, age 72, unknown 16.3
1915 Female, age 42, unknown 15.6
2223 Female, age 72, unknown 15.3
2218 Male, age 76, both hemispheres 14.9
2021 Male, age 53, unknown 14.8
1942 Male, age 51, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 27.8
Min nTPM: 10.7
Std nTPM: 3.2
Median nTPM: 16.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 26.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 24.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 23.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 23.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 21.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 21.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Midbrain
nTPM: 8.8
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 9.3
Sample C Male 9.2
Sample D Male 8.8
Periaqueductal gray
nTPM: 9.6
Samples: 3

Max nTPM: 10.7
Min nTPM: 8.8
Sample B Female 8.8
Sample C Male 10.7
Sample D Male 9.4
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.7
Sample A Female 8.1
Sample B Female 7.8
Sample C Male 10.0
Sample D Male 7.7
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 8.5
Sample C Male 9.3
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.2
Min nTPM: 18.1
Sample A Male 18.1
Sample B Male 21.1
Sample C Female 22.2
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
677 Antisense, RP_Baylor_103296, Mouse strain C57BL/6J (56 days, male) 1.8
68341663 Antisense, RP_041207_02_A01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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