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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.7
nTPM
HPA Brain:
70.0
nTPM
GTEx:
35.7
nTPM
FANTOM5:
45.1
Scaled Tags Per Million
Pig:
103.0
nTPM
Mouse:
42.7
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
70.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 67.6
2019
Male, age 18, unknown
81.1
2411
Female, age 72, unknown
73.6
2666
Male, age 74, left hemisphere
68.7
1830
Male, age 51, unknown
67.6
2219
Male, age 76, both hemispheres
66.7
1827
Male, age 72, unknown
66.0
2586
Male, age 75, left hemisphere
65.5
1870
Female, age 42, unknown
64.4
1833
Male, age 53, unknown
62.0
2828
Female, age 72, unknown
60.6
Dorsal raphe nucleus nTPM: 62.0
2750
Male, age 76, both hemispheres
64.4
1828
Male, age 53, unknown
63.6
2298
Female, age 72, unknown
63.2
2047
Male, age 72, unknown
62.5
2016
Female, age 72, unknown
56.4
Inferior colliculus nTPM: 68.5
2097
Female, age 72, unknown
71.7
1890
Male, age 53, unknown
67.8
2849
Male, age 72, unknown
67.5
1848
Female, age 42, unknown
67.0
Median raphe nucleus nTPM: 67.7
2220
Male, age 76, midline
67.7
Periaquaductal grey, anterior nTPM: 66.0
2502
Female, age 75, unknown
70.7
1947
Male, age 18, unknown
68.3
1795
Male, age 51, unknown
58.9
Periaquaductal grey, dorsal nTPM: 59.8
1831
Male, age 72, unknown
64.9
2464
Female, age 72, unknown
63.3
1840
Male, age 53, unknown
59.8
2850
Male, age 76, both hemispheres
51.2
Periaquaductal grey, lateral nTPM: 58.1
2272
Male, age 74, both hemispheres
62.2
2053
Male, age 18, unknown
56.3
2140
Male, age 76, both hemispheres
55.9
Pretectal area nTPM: 67.8
2007
Male, age 72, unknown
86.0
1817
Female, age 42, unknown
83.2
1816
Male, age 51, unknown
81.3
1944
Female, age 72, unknown
76.0
1815
Male, age 53, unknown
67.7
2667
Female, age 75, unknown
67.1
2407
Male, age 75, both hemispheres
64.0
2273
Male, age 74, both hemispheres
63.4
2224
Female, age 72, unknown
56.7
2825
Male, age 18, unknown
55.8
2316
Male, age 76, right hemisphere
45.1
Red nucleus nTPM: 69.7
1821
Female, age 72, unknown
88.8
2588
Male, age 74, left hemisphere
82.0
2785
Male, age 18, unknown
73.3
1904
Male, age 53, unknown
71.0
1865
Male, age 51, unknown
69.2
2584
Male, age 75, left hemisphere
68.1
1954
Female, age 42, unknown
66.0
2503
Female, age 72, unknown
65.6
2823
Male, age 76, right hemisphere
64.9
2725
Female, age 75, unknown
64.0
2227
Male, age 72, unknown
63.9
2769
Male, age 72, unknown
59.8
Substantia nigra nTPM: 70.0
1941
Male, age 53, unknown
81.4
1916
Female, age 42, unknown
76.6
1851
Male, age 51, unknown
73.4
2665
Male, age 74, both hemispheres
72.1
1889
Female, age 72, unknown
70.7
2241
Male, age 72, unknown
70.6
2409
Female, age 72, unknown
68.1
2590
Female, age 75, unknown
63.0
2699
Male, age 18, unknown
62.7
2583
Male, age 75, right hemisphere
61.7
Superior colliculus nTPM: 64.4
2587
Male, age 74, left hemisphere
72.5
2668
Female, age 75, unknown
71.2
1895
Male, age 76, right hemisphere
70.6
2261
Male, age 18, unknown
66.6
2087
Female, age 72, unknown
64.5
1796
Male, age 53, unknown
62.6
1839
Male, age 51, unknown
60.8
1913
Female, age 42, unknown
60.8
1995
Male, age 72, unknown
58.3
2664
Male, age 75, both hemispheres
56.2
Ventral tegmental area nTPM: 65.8
2410
Female, age 72, unknown
76.5
2223
Female, age 72, unknown
70.7
2218
Male, age 76, both hemispheres
68.5
1942
Male, age 51, unknown
60.2
1915
Female, age 42, unknown
59.9
2021
Male, age 53, unknown
59.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
35.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 35.7
Samples: 139
Max nTPM: 64.3
Min nTPM: 14.5
Std nTPM: 9.0
Median nTPM: 34.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
64.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
63.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
57.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
56.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
54.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
53.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
53.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
53.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
52.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
52.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
46.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
46.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
46.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
45.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
44.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
44.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
44.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
44.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
44.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
44.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
43.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
43.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
42.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
42.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
42.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
41.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
41.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
40.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
40.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
40.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
40.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
40.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
40.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
40.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
40.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
40.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
40.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
39.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
39.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
39.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
39.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
38.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
38.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
37.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
37.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
37.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
37.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
37.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
37.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
36.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
36.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
36.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
36.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
36.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
35.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
35.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
35.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
35.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
35.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
35.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
35.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
34.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
34.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
34.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
34.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
34.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
34.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
33.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
33.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
33.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
33.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
33.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
33.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
33.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
33.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
33.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
33.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
32.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
32.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
32.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
32.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
32.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
31.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
31.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
31.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
31.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
31.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
30.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
30.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
30.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
30.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
30.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
30.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
30.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
30.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
28.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
28.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
28.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
28.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
28.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
27.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
27.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
26.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
26.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
25.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
25.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
25.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
25.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
25.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
24.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
24.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
23.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
22.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
22.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
22.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
22.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
22.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
18.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
18.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
17.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
14.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
42.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 42.7
Samples: 4
Max nTPM: 43.4
Min nTPM: 41.8
Sample A
Male
42.8
Sample B
Male
42.8
Sample C
Female
43.4
Sample D
Female
41.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.