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TISSUE PRIMARY DATA PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.5 nTPM
HPA:46.5 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:2.7 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 45.3
2188 Female, age 91, both hemispheres 46.7
2090 Male, age 80, both hemispheres 46.4
2301 Female, age 85, both hemispheres 44.5
1984 Male, age 76, both hemispheres 43.6
Dorsal cochlear nucleus
nTPM: 45.6
2378 Male, age 80, both hemispheres 49.6
2802 Male, age 74, right hemisphere 45.8
2187 Female, age 91, both hemispheres 45.5
2370 Male, age 61, both hemispheres 44.5
2058 Male, age 76, both hemispheres 42.5
Dorsal tegmental nucleus
nTPM: 44.9
2326 Male, age 74, both hemispheres 46.1
2358 Male, age 61, both hemispheres 45.1
2083 Male, age 80, both hemispheres 44.2
1936 Male, age 76, left hemisphere 44.0
Dorsolateral tegmental area
nTPM: 45.4
2360 Male, age 74, both hemispheres 46.8
2654 Male, age 80, both hemispheres 46.0
2337 Male, age 61, both hemispheres 45.8
2751 Female, age 85, both hemispheres 44.5
2141 Male, age 76, both hemispheres 43.8
Kolliker-Fuse nucleus
nTPM: 44.9
2315 Male, age 76, right hemisphere 45.2
2793 Female, age 91, left hemisphere 45.1
2163 Male, age 80, both hemispheres 44.4
Lateral lemniscal nuclei
nTPM: 45.9
2169 Male, age 76, both hemispheres 47.4
2036 Male, age 80, both hemispheres 46.9
2746 Female, age 85, left hemisphere 46.2
2453 Male, age 74, right hemisphere 45.0
2320 Female, age 91, left hemisphere 44.0
Lateral parabrachial nucleus
nTPM: 45.5
2013 Male, age 80, both hemispheres 47.5
2139 Female, age 85, right hemisphere 45.6
2792 Male, age 76, both hemispheres 45.6
2790 Male, age 61, both hemispheres 43.3
Lateral vestibular nucleus
nTPM: 44.4
2311 Male, age 80, both hemispheres 45.3
2184 Male, age 76, both hemispheres 43.5
Locus coeruleus
nTPM: 44.3
2720 Male, age 74, both hemispheres 45.6
2123 Female, age 91, both hemispheres 45.3
2162 Male, age 80, both hemispheres 44.6
2014 Male, age 55, unknown 44.0
2317 Female, age 72, unknown 44.0
2788 Male, age 74, unknown 43.4
1980 Male, age 76, both hemispheres 43.3
Medial olivary nucleus
nTPM: 46.4
2851 Male, age 80, both hemispheres 47.5
1943 Male, age 61, both hemispheres 46.9
1962 Male, age 76, both hemispheres 46.4
2138 Female, age 91, both hemispheres 44.9
Medial parabrachial nucleus
nTPM: 44.6
2170 Female, age 91, both hemispheres 46.7
2854 Male, age 80, both hemispheres 46.1
2156 Male, age 61, both hemispheres 43.8
2463 Female, age 85, right hemisphere 43.1
2786 Male, age 76, both hemispheres 43.0
Medial periolivary nuclei
nTPM: 45.4
2791 Male, age 74, right hemisphere 46.3
2063 Male, age 76, both hemispheres 45.9
2081 Male, age 80, both hemispheres 45.1
2171 Female, age 85, both hemispheres 44.9
2458 Female, age 91, both hemispheres 44.9
Motor facial nucleus
nTPM: 45.7
2365 Male, age 74, right hemisphere 47.3
2795 Female, age 91, both hemispheres 46.3
2062 Male, age 76, both hemispheres 45.8
2697 Female, age 85, both hemispheres 45.5
2126 Male, age 61, both hemispheres 45.1
2327 Male, age 80, both hemispheres 44.1
Motor trigeminal nucleus
nTPM: 44.6
2560 Male, age 74, both hemispheres 45.9
2079 Male, age 80, both hemispheres 44.6
2309 Male, age 76, both hemispheres 44.6
2335 Male, age 61, both hemispheres 44.2
2321 Female, age 91, both hemispheres 43.7
Nuclei of the trapezoid body
nTPM: 45.4
1983 Male, age 76, both hemispheres 47.0
2735 Female, age 85, both hemispheres 46.1
2159 Male, age 61, both hemispheres 45.7
2166 Male, age 80, both hemispheres 44.3
2368 Female, age 91, both hemispheres 43.8
Paramedian reticular nucleus
nTPM: 45.9
2050 Female, age 85, both hemispheres 46.8
2052 Male, age 76, both hemispheres 46.6
2313 Male, age 61, both hemispheres 45.7
2057 Male, age 80, both hemispheres 44.4
Pontine nuclei
nTPM: 46.2
1863 Male, age 55, unknown 47.4
2787 Female, age 85, both hemispheres 47.0
2115 Male, age 80, left hemisphere 46.8
2109 Female, age 72, unknown 46.4
2319 Female, age 91, both hemispheres 46.0
2454 Male, age 74, left hemisphere 45.8
2727 Male, age 61, right hemisphere 45.6
1968 Male, age 76, left hemisphere 44.3
Pontine raphe nucleus
nTPM: 44.4
2122 Female, age 85, midline 44.8
2853 Male, age 76, midline 43.9
Posteroventral cochlear nucleus
nTPM: 45.4
2341 Male, age 80, both hemispheres 47.0
2371 Male, age 61, both hemispheres 46.5
2135 Female, age 91, both hemispheres 46.0
2752 Female, age 85, both hemispheres 43.9
2070 Male, age 76, both hemispheres 43.5
Principal sensory trigeminal nucleus
nTPM: 45.0
2158 Male, age 61, both hemispheres 45.9
2008 Male, age 80, left hemisphere 45.7
2367 Female, age 91, left hemisphere 45.3
2324 Male, age 76, both hemispheres 42.9
Reticular pontine nucleus, caudal
nTPM: 44.3
2092 Male, age 76, both hemispheres 44.8
2332 Male, age 80, right hemisphere 44.3
2559 Male, age 74, both hemispheres 44.1
2457 Female, age 91, both hemispheres 43.8
Reticular pontine nucleus, oral
nTPM: 44.2
2012 Female, age 85, both hemispheres 44.6
2167 Male, age 76, both hemispheres 44.6
1939 Male, age 80, both hemispheres 44.3
2366 Female, age 91, both hemispheres 44.0
2361 Male, age 74, both hemispheres 43.3
Reticulotegmental nucleus
nTPM: 44.4
2325 Male, age 76, both hemispheres 45.1
2452 Male, age 74, both hemispheres 45.0
2333 Male, age 80, both hemispheres 44.7
2322 Female, age 91, both hemispheres 43.0
Spinal trigeminal nucleus, oral
nTPM: 44.1
2164 Male, age 80, both hemispheres 45.4
2737 Female, age 85, both hemispheres 43.7
1978 Male, age 76, both hemispheres 43.3
Subcoeruleus area
nTPM: 44.3
1958 Male, age 80, both hemispheres 45.3
2089 Male, age 76, left hemisphere 45.1
2369 Female, age 85, left hemisphere 44.4
2451 Male, age 74, both hemispheres 43.7
2323 Female, age 91, left hemisphere 43.3
Superior olive
nTPM: 45.8
2364 Male, age 74, right hemisphere 46.7
1875 Female, age 85, both hemispheres 46.2
2020 Male, age 76, both hemispheres 45.7
2561 Female, age 91, both hemispheres 45.2
2329 Male, age 80, right hemisphere 45.0
Superior vestibular nucleus
nTPM: 45.5
2383 Male, age 74, both hemispheres 46.9
2015 Male, age 80, both hemispheres 45.6
2061 Male, age 76, both hemispheres 44.0
Ventral periolivary nuclei
nTPM: 46.5
2794 Female, age 91, left hemisphere 47.0
2023 Male, age 76, both hemispheres 46.8
2130 Female, age 85, both hemispheres 46.1
2165 Male, age 80, both hemispheres 46.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 45.5
2161 Male, age 80, both hemispheres 46.7
2840 Female, age 85, both hemispheres 46.0
2456 Female, age 91, both hemispheres 45.7
2449 Male, age 74, both hemispheres 45.5
1959 Male, age 76, both hemispheres 45.3
2359 Male, age 61, both hemispheres 43.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 16.0
FF:10165-103B3 76 years, female 23.5
FF:10182-103D2 60 years, female 8.6
Pons
Scaled Tags Per Million: 18.0
FF:10033-101E6 18-54 years, mixed 18.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.7
Pig sample Sample description nTPM
Pons
nTPM: 2.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.0
Sample A Female 4.0
Sample B Female 1.0
Sample C Male 1.2
Sample D Male 4.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.