BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:14.7 nTPM
FANTOM5:81.0 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:18.9 nTPM
Allen mouse:12.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.6
1781 Male, age 74, unknown 10.9
2290 Female, age 72, unknown 9.9
2289 Male, age 61, right hemisphere 9.4
2288 Male, age 75, left hemisphere 8.4
2846 Female, age 79, unknown 8.4
1854 Male, age 80, left hemisphere 7.4
1857 Female, age 85, left hemisphere 7.2
2481 Female, age 94, left hemisphere 7.1
Claustrum
nTPM: 11.8
2645 Female, age 72, unknown 13.5
2568 Male, age 61, both hemispheres 13.4
2284 Female, age 91, both hemispheres 12.9
2292 Female, age 85, both hemispheres 12.5
1956 Male, age 74, unknown 12.0
2198 Male, age 80, both hemispheres 11.8
2196 Female, age 79, unknown 11.4
2491 Male, age 75, both hemispheres 10.2
2392 Female, age 94, both hemispheres 8.7
Globus pallidus, externus
nTPM: 8.4
2646 Male, age 61, right hemisphere 13.5
2567 Female, age 72, unknown 8.8
2772 Female, age 79, unknown 7.3
1996 Male, age 80, right hemisphere 6.7
2395 Male, age 75, both hemispheres 5.5
Globus pallidus, internus
nTPM: 7.6
2566 Female, age 72, unknown 9.3
2778 Female, age 91, both hemispheres 7.9
2483 Female, age 94, right hemisphere 7.7
2287 Male, age 75, right hemisphere 7.5
2111 Female, age 85, right hemisphere 7.4
1818 Male, age 74, unknown 7.3
2037 Male, age 80, right hemisphere 6.4
Nucleus accumbens
nTPM: 8.5
1783 Male, age 74, unknown 9.8
2698 Female, age 72, unknown 9.7
1806 Female, age 85, left hemisphere 8.8
2824 Male, age 61, right hemisphere 8.8
2732 Male, age 80, right hemisphere 7.9
2286 Male, age 75, left hemisphere 7.7
2391 Female, age 94, left hemisphere 7.6
1856 Female, age 91, right hemisphere 7.5
Nucleus basalis of Meynert
nTPM: 8.8
2569 Male, age 61, both hemispheres 13.7
2821 Male, age 75, both hemispheres 8.4
2484 Female, age 94, left hemisphere 7.7
2393 Male, age 80, right hemisphere 5.4
Nucleus of the diagonal band
nTPM: 11.4
2195 Female, age 85, both hemispheres 14.1
2029 Male, age 61, right hemisphere 11.3
1979 Male, age 74, unknown 11.0
2775 Male, age 80, right hemisphere 11.0
1812 Female, age 91, both hemispheres 9.3
Olfactory tubercle
nTPM: 11.2
2856 Male, age 75, right hemisphere 12.9
2487 Female, age 94, left hemisphere 10.9
1998 Female, age 91, both hemispheres 10.8
1846 Male, age 80, right hemisphere 10.2
Putamen
nTPM: 8.0
2647 Male, age 75, left hemisphere 10.5
1829 Male, age 74, unknown 8.6
1838 Male, age 80, right hemisphere 8.1
2489 Female, age 72, unknown 8.1
2482 Female, age 94, left hemisphere 7.0
1937 Female, age 91, right hemisphere 6.8
2466 Female, age 79, unknown 6.5
Septal nuclei
nTPM: 10.3
1960 Male, age 74, unknown 13.0
2629 Female, age 94, right hemisphere 12.6
2031 Female, age 72, unknown 11.0
2059 Female, age 85, both hemispheres 10.3
2009 Female, age 91, both hemispheres 9.1
2394 Male, age 61, left hemisphere 8.3
2199 Male, age 80, right hemisphere 8.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.2
Samples: 246

Max nTPM: 19.1
Min nTPM: 7.8
Std nTPM: 1.7
Median nTPM: 13.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 19.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 19.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 17.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 16.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 16.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 16.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 16.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 16.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 16.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 22.1
Min nTPM: 8.5
Std nTPM: 2.3
Median nTPM: 14.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 22.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 21.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 21.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 20.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 20.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 19.8
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 19.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 19.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 19.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 19.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 19.0
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Brain - Putamen (basal ganglia)
Average nTPM: 13.1
Samples: 205

Max nTPM: 21.5
Min nTPM: 8.1
Std nTPM: 1.8
Median nTPM: 12.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 21.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 20.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 19.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 18.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 17.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 16.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 16.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 16.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 16.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 16.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 16.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.5
FF:10164-103B2 76 years, female 64.5
Globus pallidus
Scaled Tags Per Million: 74.1
FF:10175-103C4 60 years, female 76.5
FF:10161-103A8 76 years, female 71.7
Nucleus accumbens
Scaled Tags Per Million: 70.7
FF:10037-101F1 23-56 years, mixed 70.7
Putamen
Scaled Tags Per Million: 81.0
FF:10176-103C5 60 years, female 81.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Caudate
nTPM: 14.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.1
Sample A Female 14.0
Sample B Female 15.3
Sample C Male 15.9
Sample D Male 13.1
Putamen
nTPM: 14.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.2
Sample A Female 14.7
Sample B Female 12.2
Sample C Male 14.0
Sample D Male 16.3
Septum
nTPM: 14.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.1
Sample A Female 16.4
Sample B Female 15.4
Sample C Male 13.9
Sample D Male 13.1
Ventral pallidum
nTPM: 15.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 15.3
Sample C Male 16.6
Sample D Male 15.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.7
Sample A Male 17.5
Sample B Male 20.4
Sample C Female 16.8
Sample D Female 16.7
Septum
nTPM: 16.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 15.3
Sample A Male 17.6
Sample B Male 15.3
Sample C Female 16.3
Sample D Female 16.8
Ventral forebrain
nTPM: 18.9
Samples: 4

Max nTPM: 19.9
Min nTPM: 17.8
Sample A Male 19.9
Sample B Male 17.8
Sample C Female 19.1
Sample D Female 18.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.8
69059949 Antisense, RP_050317_04_F09, Mouse strain C57BL/6J (56 days, male) 12.8
Pallidum
Expression energy: 10.4
69059949 Antisense, RP_050317_04_F09, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

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