MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:6.9 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:6.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
1830 Male, age 51, unknown 15.2
1870 Female, age 42, unknown 13.5
2019 Male, age 18, unknown 13.5
1833 Male, age 53, unknown 13.3
2411 Female, age 72, unknown 12.0
2828 Female, age 72, unknown 11.4
2219 Male, age 76, both hemispheres 11.3
1827 Male, age 72, unknown 10.4
2666 Male, age 74, left hemisphere 9.1
2586 Male, age 75, left hemisphere 8.8
Dorsal raphe nucleus
nTPM: 11.2
2016 Female, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 11.9
2047 Male, age 72, unknown 9.5
2298 Female, age 72, unknown 9.1
Inferior colliculus
nTPM: 10.9
1890 Male, age 53, unknown 12.3
2849 Male, age 72, unknown 11.9
1848 Female, age 42, unknown 10.5
2097 Female, age 72, unknown 8.8
Median raphe nucleus
nTPM: 8.5
2220 Male, age 76, midline 8.5
Pedunculopontine tegmental nucleus
nTPM: 12.1
2338 Male, age 61, both hemispheres 14.8
2334 Male, age 80, both hemispheres 10.9
1921 Female, age 85, both hemispheres 10.8
Periaquaductal grey, anterior
nTPM: 9.8
1947 Male, age 18, unknown 10.5
1795 Male, age 51, unknown 9.8
2502 Female, age 75, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 11.7
2464 Female, age 72, unknown 13.2
2850 Male, age 76, both hemispheres 12.9
1831 Male, age 72, unknown 10.7
1840 Male, age 53, unknown 10.0
Periaquaductal grey, lateral
nTPM: 12.2
2272 Male, age 74, both hemispheres 13.7
2140 Male, age 76, both hemispheres 12.0
2053 Male, age 18, unknown 10.8
Pretectal area
nTPM: 10.4
2273 Male, age 74, both hemispheres 13.7
2667 Female, age 75, unknown 12.6
2316 Male, age 76, right hemisphere 12.3
1815 Male, age 53, unknown 11.4
2825 Male, age 18, unknown 11.0
2224 Female, age 72, unknown 10.3
1944 Female, age 72, unknown 9.6
2407 Male, age 75, both hemispheres 9.1
1817 Female, age 42, unknown 8.9
2007 Male, age 72, unknown 8.3
1816 Male, age 51, unknown 7.5
Red nucleus
nTPM: 14.2
2823 Male, age 76, right hemisphere 18.1
2503 Female, age 72, unknown 16.0
1865 Male, age 51, unknown 15.8
2769 Male, age 72, unknown 15.7
1904 Male, age 53, unknown 15.5
1954 Female, age 42, unknown 15.0
2227 Male, age 72, unknown 14.3
1821 Female, age 72, unknown 14.1
2785 Male, age 18, unknown 14.0
2588 Male, age 74, left hemisphere 12.5
2725 Female, age 75, unknown 11.6
2584 Male, age 75, left hemisphere 8.3
Substantia nigra
nTPM: 11.6
2409 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 13.9
2590 Female, age 75, unknown 13.2
2241 Male, age 72, unknown 13.1
2583 Male, age 75, right hemisphere 12.2
1889 Female, age 72, unknown 10.8
2665 Male, age 74, both hemispheres 10.5
1851 Male, age 51, unknown 9.8
1941 Male, age 53, unknown 9.0
1916 Female, age 42, unknown 8.6
Superior colliculus
nTPM: 10.9
1913 Female, age 42, unknown 15.1
1995 Male, age 72, unknown 13.0
1895 Male, age 76, right hemisphere 11.7
2587 Male, age 74, left hemisphere 11.5
1839 Male, age 51, unknown 11.2
2087 Female, age 72, unknown 10.6
2668 Female, age 75, unknown 10.0
2664 Male, age 75, both hemispheres 9.5
1796 Male, age 53, unknown 9.2
2261 Male, age 18, unknown 7.3
Ventral tegmental area
nTPM: 11.6
2223 Female, age 72, unknown 13.3
2410 Female, age 72, unknown 12.2
2021 Male, age 53, unknown 11.8
1942 Male, age 51, unknown 11.7
2218 Male, age 76, both hemispheres 10.6
1915 Female, age 42, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 139

Max nTPM: 13.5
Min nTPM: 2.4
Std nTPM: 1.9
Median nTPM: 6.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 13.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 11.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 10.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 10.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 10.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 9.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 9.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.7
Sample A Female 6.9
Sample B Female 7.3
Sample C Male 6.7
Sample D Male 6.7
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 7.7
Min nTPM: 7.2
Sample B Female 7.7
Sample C Male 7.2
Sample D Male 7.5
Substantia nigra
nTPM: 7.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.4
Sample C Male 6.6
Sample D Male 8.8
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 7.4
Sample C Male 7.3
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.6
Sample A Male 7.0
Sample B Male 7.0
Sample C Female 6.6
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71789939 Antisense, RP_050926_02_D01, Mouse strain C57BL/6J (56 days, male) 1.1
71211991 Antisense, RP_050816_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.