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POMGNT1
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:51.2 nTPM
HPA:51.2 nTPM
GTEx:80.6 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:36.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 51.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 49.4
2565 Male, age 75, midline 51.0
2816 Male, age 47, midline 50.4
1981 Female, age 72, midline 49.7
2048 Male, age 55, midline 48.3
2194 Female, age 79, both hemispheres 47.3
Cervical spinal cord, dorsal horn
nTPM: 51.2
2296 Male, age 66, both hemispheres 63.6
2173 Female, age 72, unknown 55.1
1877 Male, age 55, unknown 50.1
2069 Male, age 47, both hemispheres 49.9
2721 Male, age 90, both hemispheres 44.7
2297 Male, age 75, both hemispheres 43.6
Cervical spinal cord, ventral horn
nTPM: 50.9
2480 Male, age 75, both hemispheres 53.0
2068 Male, age 55, unknown 51.3
2098 Female, age 72, unknown 50.9
2820 Female, age 79, both hemispheres 50.8
2295 Male, age 66, both hemispheres 49.9
2809 Male, age 90, both hemispheres 49.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 80.6
Samples: 159

Max nTPM: 147.4
Min nTPM: 36.1
Std nTPM: 24.4
Median nTPM: 77.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 147.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 145.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 142.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 139.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 132.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 131.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 124.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 123.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 118.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 115.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 113.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 113.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 113.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 112.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 112.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 110.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 110.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 109.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 108.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 106.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 106.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 105.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 103.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 102.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 102.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 102.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 100.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 100.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 99.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 99.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 96.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 96.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 96.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 95.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 95.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 94.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 94.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 94.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 93.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 92.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 92.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 91.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 91.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 90.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 90.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 90.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 90.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 88.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 88.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 87.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 87.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 87.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 85.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 85.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 85.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 85.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 85.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 83.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 82.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 82.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 81.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 81.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 80.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 80.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 80.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 78.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 77.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 76.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 75.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 75.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 74.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 73.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 72.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 72.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 72.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 72.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 70.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 70.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 70.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 69.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 69.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 68.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 67.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 66.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 65.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 65.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 65.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 64.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 64.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 64.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 62.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 62.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 62.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 62.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 62.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 61.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 61.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 60.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 60.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 59.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 59.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 59.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 59.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 58.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 56.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 55.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 54.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 53.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 53.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 53.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 51.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 50.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 50.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 50.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 50.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 50.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 49.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 48.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 48.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 46.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 45.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 44.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 40.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 39.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 37.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 36.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 48.3
FF:10181-103D1 60 years, female 56.8
FF:10159-103A6 76 years, female 39.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35.5
Samples: 4

Max nTPM: 36.6
Min nTPM: 34.2
Sample A Female 35.3
Sample B Female 34.2
Sample C Male 36.6
Sample D Male 35.8
Ventral spinal cord
nTPM: 36.4
Samples: 4

Max nTPM: 41.4
Min nTPM: 34.0
Sample A Female 35.7
Sample B Female 34.0
Sample C Male 34.5
Sample D Male 41.4

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