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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:78.2 nTPM
GTEx:78.2 nTPM
FANTOM5:80.1 Scaled Tags Per Million
Pig:62.5 nTPM
Mouse:187.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 78.2
Samples: 105

Max nTPM: 211.4
Min nTPM: 40.6
Std nTPM: 24.4
Median nTPM: 0.0
99_1 64 years, male 211.4
317_1 60 years, male 147.0
119_1 70 years, female 134.0
109_1 81 years, female 125.9
42_1 85 years, male 124.8
491_1 89 years, female 115.5
120_1 70 years, female 112.4
266_1 85 years, male 108.0
379_1 60 years, male 107.7
347_1 72 years, male 105.4
115_1 83 years, male 105.3
89_1 63 years, male 104.7
162_1 79 years, female 104.4
41_1 94 years, female 103.9
447_1 81 years, male 103.0
173_1 67 years, male 102.8
149_1 88 years, male 99.6
117_1 61 years, male 99.4
315_1 62 years, female 98.3
414_1 84 years, female 96.8
32_1 67 years, male 96.7
9_1 66 years, female 96.4
142_1 61 years, female 95.1
355_1 70 years, female 94.8
415_1 77 years, female 94.2
413_1 59 years, female 93.4
404_1 82 years, female 92.9
386_1 76 years, male 90.6
308_1 70 years, female 87.9
43_1 64 years, female 86.2
324_1 76 years, male 86.0
452_1 88 years, female 84.7
307_1 66 years, female 84.4
490_1 67 years, female 84.4
243_1 75 years, male 84.2
35_1 74 years, female 83.5
466_1 57 years, female 82.0
254_1 77 years, female 80.5
126_1 63 years, male 79.8
137_1 83 years, male 79.5
375_1 74 years, female 78.8
356_1 87 years, female 78.6
177_1 74 years, male 77.8
189_1 76 years, male 77.6
352_1 62 years, male 76.9
229_1 69 years, female 76.8
499_1 55 years, female 76.1
81_1 67 years, male 75.5
526_1 61 years, male 75.5
313_1 79 years, female 74.8
18_1 88 years, male 74.3
501_1 88 years, male 73.8
506_1 65 years, male 73.2
172_1 72 years, female 73.1
265_1 87 years, male 72.7
246_1 77 years, male 72.4
311_1 78 years, male 71.5
394_1 75 years, female 71.4
2_1 77 years, female 70.1
237_1 82 years, male 69.0
351_1 91 years, male 68.1
264_1 73 years, female 68.0
350_1 84 years, female 67.9
468_1 89 years, male 67.7
153_1 70 years, female 67.1
291_1 76 years, male 67.0
17_1 71 years, male 66.8
348_1 84 years, male 66.8
288_1 66 years, female 66.7
251_1 78 years, male 66.1
335_1 73 years, female 65.3
495_1 57 years, female 65.0
384_1 83 years, male 64.9
353_1 82 years, female 64.4
139_1 64 years, female 64.1
349_1 83 years, male 63.9
145_1 84 years, male 63.6
503_1 68 years, male 63.1
517_1 88 years, male 63.1
292_1 71 years, male 62.8
354_1 81 years, female 62.3
217_1 76 years, male 60.5
314_1 67 years, male 60.4
6_1 73 years, female 60.2
480_1 63 years, male 58.5
377_1 82 years, female 58.4
286_1 68 years, female 58.3
293_1 68 years, female 58.1
425_1 59 years, female 57.4
318_1 68 years, male 56.6
4_1 88 years, female 56.4
518_1 75 years, female 55.5
319_1 81 years, male 54.4
389_1 86 years, female 54.4
406_1 79 years, male 54.4
405_1 91 years, male 54.0
321_1 62 years, female 53.3
295_1 61 years, female 51.6
376_1 75 years, female 49.3
320_1 89 years, female 48.6
396_1 62 years, male 46.9
163_1 78 years, male 46.3
322_1 76 years, male 44.5
316_1 62 years, male 42.6
218_1 71 years, female 40.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 80.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 80.1
FF:10030-101E3 24-65 years, mixed 80.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.5
Pig sample Sample description nTPM
Retina
nTPM: 62.5
Samples: 4

Max nTPM: 66.1
Min nTPM: 57.9
Sample A Female 57.9
Sample B Female 60.9
Sample C Male 65.0
Sample D Male 66.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 187.2
Mouse sample Sample description nTPM
Retina
nTPM: 187.2
Samples: 4

Max nTPM: 223.9
Min nTPM: 165.6
Sample A Male 190.4
Sample B Male 165.6
Sample C Female 169.0
Sample D Female 223.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.