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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 134.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 155.1
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 87.5
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 122.0
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 140.3
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 111.9
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 231.9
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 145.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 146.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 57.5
Min RPKM: 13.3
Std RPKM: 8.8
Median RPKM: 34.1
GTEX-ZV7C-2026-SM-5NQ8F
57.5
GTEX-YFCO-1726-SM-4W21S
57.4
GTEX-11EQ9-1926-SM-5PNVV
56.5
GTEX-OXRL-2126-SM-3NM98
55.9
GTEX-132QS-1226-SM-5P9GD
54.5
GTEX-ZDYS-1326-SM-5IJFF
53.5
GTEX-13FTW-1326-SM-5LZZD
53.4
GTEX-RM2N-1326-SM-48FCW
52.7
GTEX-YEC4-1526-SM-4W1YU
51.8
GTEX-ZUA1-2726-SM-59HLJ
51.0
GTEX-ZPU1-2126-SM-57WED
51.0
GTEX-ZTSS-1526-SM-51MTC
49.2
GTEX-WH7G-1926-SM-4LVMM
49.1
GTEX-S7SE-0326-SM-4AT5Q
48.5
GTEX-145MO-0126-SM-5S2QU
48.4
GTEX-XBED-2026-SM-4AT5D
47.9
GTEX-11TT1-2226-SM-5GU6B
46.7
GTEX-145LT-0426-SM-5LUAP
46.4
GTEX-ZZ64-1126-SM-5GZXY
46.1
GTEX-145MH-2326-SM-5O9AW
45.9
GTEX-Y9LG-1726-SM-4VBQE
45.8
GTEX-111VG-1926-SM-5GIDO
45.7
GTEX-WHSB-2126-SM-4M1XF
45.5
GTEX-SNMC-1026-SM-4DM7K
45.4
GTEX-V1D1-2126-SM-4JBH4
44.2
GTEX-ZTX8-1126-SM-51MRM
44.1
GTEX-ZQUD-2026-SM-51MSM
44.0
GTEX-11DXZ-2126-SM-59881
43.9
GTEX-YB5E-1926-SM-5IFIG
43.8
GTEX-T8EM-0126-SM-4DM5R
43.6
GTEX-TKQ1-0926-SM-4DXU2
43.6
GTEX-OIZH-2126-SM-3NB1P
43.5
GTEX-Y8E4-2226-SM-5LU94
43.5
GTEX-111CU-1726-SM-5EGHM
43.2
GTEX-XBEC-0126-SM-4GIDT
42.9
GTEX-QLQ7-1426-SM-4R1JX
42.3
GTEX-ZA64-1626-SM-5CVME
42.3
GTEX-11GS4-2026-SM-5N9CP
42.2
GTEX-XGQ4-2026-SM-4AT6G
42.0
GTEX-139TT-2226-SM-5LZWO
41.6
GTEX-1212Z-0326-SM-5FQSJ
41.2
GTEX-13O61-2026-SM-5J2M6
41.2
GTEX-117XS-2026-SM-5GID1
41.1
GTEX-S4Q7-1226-SM-4AD5I
40.9
GTEX-11P82-1526-SM-5BC5M
40.8
GTEX-U3ZH-1526-SM-4DXV1
40.6
GTEX-147JS-0126-SM-5S2TW
40.5
GTEX-144GM-0426-SM-5Q5C8
40.3
GTEX-REY6-0126-SM-48FDT
40.2
GTEX-13O21-1226-SM-5J2MK
40.0
GTEX-Q2AI-1226-SM-48U14
40.0
GTEX-S3XE-1526-SM-4AD5A
39.9
GTEX-XPT6-1626-SM-4B655
39.1
GTEX-Y111-2426-SM-4TT23
39.1
GTEX-SNOS-1126-SM-4DM67
38.9
GTEX-139T6-1226-SM-5IFFC
38.8
GTEX-WFON-2026-SM-4LVMW
38.8
GTEX-Y5V6-1726-SM-4VDSZ
38.8
GTEX-13OW6-0126-SM-5IJGM
37.9
GTEX-ZT9W-2226-SM-57WFU
37.7
GTEX-S33H-0126-SM-4AD62
37.6
GTEX-U4B1-1526-SM-4DXSL
37.6
GTEX-11EI6-2226-SM-5EGJM
37.4
GTEX-O5YT-2126-SM-3MJGD
37.4
GTEX-13111-1526-SM-5EGJX
37.3
GTEX-12C56-1426-SM-5FQSW
37.2
GTEX-R55C-1426-SM-48FED
37.2
GTEX-ZYFC-0126-SM-5GIEH
37.2
GTEX-ZDTT-2026-SM-5K7TY
37.2
GTEX-1399R-1626-SM-5P9GG
37.1
GTEX-111YS-2026-SM-5EGGL
36.9
GTEX-13OVL-0426-SM-5IFG6
36.5
GTEX-12ZZY-0126-SM-5LZV2
36.5
GTEX-ZVZP-2226-SM-57WBF
36.3
GTEX-YEC3-1726-SM-5IFIK
36.2
GTEX-11LCK-2326-SM-5HL53
36.0
GTEX-139TS-1726-SM-5IJG5
36.0
GTEX-14753-0626-SM-5Q5CY
35.7
GTEX-PLZ5-1526-SM-3P5ZX
35.4
GTEX-ZYT6-2726-SM-5GICP
35.3
GTEX-RN64-2326-SM-48FDW
35.3
GTEX-RUSQ-2126-SM-47JXK
35.2
GTEX-OIZI-0126-SM-3NB13
34.8
GTEX-U3ZM-1626-SM-4DXSK
34.8
GTEX-OOBK-2126-SM-3LK5T
34.2
GTEX-144GL-0726-SM-5LU4P
34.2
GTEX-WK11-0326-SM-4OOS6
33.9
GTEX-XAJ8-1326-SM-47JYT
33.9
GTEX-OHPM-2126-SM-3LK75
33.9
GTEX-WFG8-1926-SM-4LVM1
33.8
GTEX-TKQ2-1526-SM-4DXUN
33.7
GTEX-117YW-1526-SM-5EGGP
33.7
GTEX-XPVG-2226-SM-4B65U
33.7
GTEX-11WQK-2826-SM-5EQKH
33.5
GTEX-ZVTK-0126-SM-57WDG
33.3
GTEX-13VXU-0726-SM-5J2O7
33.1
GTEX-WOFM-1126-SM-4OOSB
33.0
GTEX-YJ89-0626-SM-4TT3Z
32.5
GTEX-14ABY-0626-SM-5Q5C9
32.5
GTEX-Q2AH-1526-SM-48TZG
32.5
GTEX-X5EB-2026-SM-4E3KA
32.0
GTEX-X3Y1-2626-SM-4PQZI
31.6
GTEX-XMK1-2026-SM-4B65K
31.6
GTEX-QMRM-1526-SM-4R1K6
31.5
GTEX-QLQW-1026-SM-447A9
31.2
GTEX-11NUK-2626-SM-5A5MB
31.1
GTEX-R55E-0726-SM-48FCZ
30.9
GTEX-11P7K-1026-SM-5HL6Y
30.9
GTEX-RWSA-2426-SM-47JXR
30.9
GTEX-13NYB-2226-SM-5MR58
30.9
GTEX-11WQC-2326-SM-5EQKE
30.8
GTEX-13112-0226-SM-5P9IV
30.7
GTEX-13N2G-0126-SM-5N9DV
30.7
GTEX-11TUW-2226-SM-5EQL9
30.6
GTEX-13NZB-2026-SM-5MR4M
30.5
GTEX-11NSD-1026-SM-5N9BE
30.3
GTEX-13FHP-2826-SM-5IJFW
30.0
GTEX-VJYA-1426-SM-4KL1Y
30.0
GTEX-T6MN-2026-SM-4DM7L
30.0
GTEX-YF7O-2026-SM-4W1YE
29.9
GTEX-SUCS-1326-SM-4DM5T
29.8
GTEX-144GN-1626-SM-5Q5BU
29.7
GTEX-111FC-1926-SM-5GZYC
29.5
GTEX-11ONC-2226-SM-5HL6D
29.2
GTEX-S7PM-0626-SM-4AD4Q
29.2
GTEX-UPJH-0126-SM-4IHLL
29.1
GTEX-P4QS-2126-SM-3NMCF
29.1
GTEX-T5JC-0726-SM-4DM55
28.9
GTEX-11ZUS-2726-SM-5FQUA
28.7
GTEX-S95S-1126-SM-4B64E
28.3
GTEX-13NZA-2526-SM-5IJFX
28.1
GTEX-QV31-1126-SM-4R1K4
28.0
GTEX-11NV4-1726-SM-5N9FC
27.9
GTEX-N7MS-0126-SM-3TW8O
27.3
GTEX-QV44-1726-SM-4R1KG
27.0
GTEX-11O72-0726-SM-5P9GO
27.0
GTEX-12WSM-1326-SM-5GCP9
26.6
GTEX-11OF3-1826-SM-5987N
26.5
GTEX-1399Q-2826-SM-5IJEZ
26.4
GTEX-131XE-0426-SM-5IJF4
26.4
GTEX-11EQ8-1426-SM-5EGJR
26.3
GTEX-U8T8-1126-SM-4DXUE
26.3
GTEX-1339X-1926-SM-5PNVP
26.2
GTEX-12WSH-0326-SM-5GCNH
26.2
GTEX-12WSL-2326-SM-5DUXQ
26.0
GTEX-13OW5-2526-SM-5L3I1
26.0
GTEX-OOBJ-2126-SM-3NB1N
26.0
GTEX-13N1W-2626-SM-5IJEP
26.0
GTEX-U8XE-0126-SM-4E3I3
25.9
GTEX-12WSI-2126-SM-5GCMV
25.9
GTEX-13FLW-2126-SM-5N9FD
25.4
GTEX-V955-1926-SM-4KL1L
25.0
GTEX-R55D-0126-SM-48FEL
24.9
GTEX-QEG4-0126-SM-48TZE
24.8
GTEX-WZTO-0326-SM-4PQYZ
24.8
GTEX-PW2O-1426-SM-48TCD
24.5
GTEX-WVLH-2626-SM-4MVNV
24.5
GTEX-XLM4-1526-SM-4AT6D
24.4
GTEX-12696-0226-SM-5EGL3
24.4
GTEX-X261-2326-SM-4PQYU
24.4
GTEX-NFK9-0126-SM-3LK5H
24.3
GTEX-ZAB5-2426-SM-5CVMW
24.1
GTEX-14A6H-2326-SM-5Q5B5
23.5
GTEX-QEG5-0126-SM-4R1JR
23.4
GTEX-XQ3S-2726-SM-4BOP2
23.3
GTEX-ZT9X-1426-SM-5DUX1
20.7
GTEX-13O1R-0726-SM-5IJEI
20.5
GTEX-13OVH-0726-SM-5N9BU
19.4
GTEX-Z93S-1726-SM-5HL8G
18.5
GTEX-P4QR-0226-SM-3NMCH
18.3
GTEX-ZAB4-0126-SM-5CVMG
16.2
GTEX-147F4-0626-SM-5LUAK
13.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.