MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:24.0 nTPM
FANTOM5:48.2 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:37.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2586 Male, age 75, left hemisphere 29.1
2019 Male, age 18, unknown 27.3
2666 Male, age 74, left hemisphere 24.6
2219 Male, age 76, both hemispheres 24.1
2828 Female, age 72, unknown 23.7
2411 Female, age 72, unknown 23.1
1827 Male, age 72, unknown 22.4
1830 Male, age 51, unknown 22.1
1833 Male, age 53, unknown 21.7
1870 Female, age 42, unknown 20.4
Dorsal raphe nucleus
nTPM: 23.0
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 24.6
2298 Female, age 72, unknown 23.4
2750 Male, age 76, both hemispheres 21.7
2016 Female, age 72, unknown 20.2
Inferior colliculus
nTPM: 21.2
1848 Female, age 42, unknown 21.7
2097 Female, age 72, unknown 21.2
2849 Male, age 72, unknown 21.1
1890 Male, age 53, unknown 20.9
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Pedunculopontine tegmental nucleus
nTPM: 22.7
1921 Female, age 85, both hemispheres 23.3
2334 Male, age 80, both hemispheres 23.2
2338 Male, age 61, both hemispheres 21.5
Periaquaductal grey, anterior
nTPM: 23.9
2502 Female, age 75, unknown 25.8
1795 Male, age 51, unknown 23.3
1947 Male, age 18, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 20.5
2464 Female, age 72, unknown 22.1
1831 Male, age 72, unknown 20.8
1840 Male, age 53, unknown 20.5
2850 Male, age 76, both hemispheres 18.7
Periaquaductal grey, lateral
nTPM: 20.2
2272 Male, age 74, both hemispheres 20.9
2053 Male, age 18, unknown 19.9
2140 Male, age 76, both hemispheres 19.7
Pretectal area
nTPM: 22.8
2007 Male, age 72, unknown 26.7
1817 Female, age 42, unknown 25.6
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 23.8
2407 Male, age 75, both hemispheres 22.8
2667 Female, age 75, unknown 22.4
1815 Male, age 53, unknown 21.9
2224 Female, age 72, unknown 21.9
2825 Male, age 18, unknown 21.0
2273 Male, age 74, both hemispheres 20.0
2316 Male, age 76, right hemisphere 20.0
Red nucleus
nTPM: 22.3
2584 Male, age 75, left hemisphere 26.0
2785 Male, age 18, unknown 24.5
2588 Male, age 74, left hemisphere 23.7
2769 Male, age 72, unknown 22.7
2227 Male, age 72, unknown 22.4
1821 Female, age 72, unknown 21.8
2823 Male, age 76, right hemisphere 21.7
2503 Female, age 72, unknown 21.6
1954 Female, age 42, unknown 21.2
1904 Male, age 53, unknown 20.9
1865 Male, age 51, unknown 20.7
2725 Female, age 75, unknown 20.7
Substantia nigra
nTPM: 24.7
1916 Female, age 42, unknown 28.1
2665 Male, age 74, both hemispheres 27.8
1941 Male, age 53, unknown 27.3
1851 Male, age 51, unknown 25.4
1889 Female, age 72, unknown 24.2
2699 Male, age 18, unknown 24.1
2590 Female, age 75, unknown 23.3
2583 Male, age 75, right hemisphere 22.8
2241 Male, age 72, unknown 22.1
2409 Female, age 72, unknown 21.9
Superior colliculus
nTPM: 22.6
2664 Male, age 75, both hemispheres 27.6
2087 Female, age 72, unknown 25.1
2668 Female, age 75, unknown 23.9
1839 Male, age 51, unknown 22.9
1796 Male, age 53, unknown 22.6
2587 Male, age 74, left hemisphere 21.6
1895 Male, age 76, right hemisphere 21.5
2261 Male, age 18, unknown 21.0
1995 Male, age 72, unknown 20.2
1913 Female, age 42, unknown 19.4
Ventral tegmental area
nTPM: 23.3
2410 Female, age 72, unknown 24.8
1942 Male, age 51, unknown 24.7
2218 Male, age 76, both hemispheres 23.6
2021 Male, age 53, unknown 23.2
1915 Female, age 42, unknown 22.7
2223 Female, age 72, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 45.2
Min nTPM: 9.7
Std nTPM: 6.6
Median nTPM: 23.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 40.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 39.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 34.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 33.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.2
FF:10158-103A5 76 years, female 48.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.5
Pig sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 43.3
Min nTPM: 29.3
Sample A Female 43.3
Sample B Female 29.3
Sample C Male 30.1
Sample D Male 32.5
Periaqueductal gray
nTPM: 28.8
Samples: 3

Max nTPM: 30.5
Min nTPM: 27.1
Sample B Female 28.9
Sample C Male 30.5
Sample D Male 27.1
Substantia nigra
nTPM: 31.6
Samples: 4

Max nTPM: 39.3
Min nTPM: 28.3
Sample A Female 39.3
Sample B Female 29.8
Sample C Male 28.8
Sample D Male 28.3
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 41.2
Min nTPM: 34.2
Sample A Female 41.2
Sample B Female 39.9
Sample C Male 34.2
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 44.6
Min nTPM: 31.6
Sample A Male 44.6
Sample B Male 35.2
Sample C Female 31.6
Sample D Female 37.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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