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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:165.1 nTPM
HPA:165.1 nTPM
GTEx:261.0 nTPM
FANTOM5:131.7 Scaled Tags Per Million
Pig:115.2 nTPM
Mouse:124.3 nTPM
Allen mouse:10.1 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041713Antibody HPA049578
Glial cells LowNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 165.1
Sample id Sample description nTPM
Hippocampus
nTPM: 165.1
2621 Female, age 67, right hemisphere 196.8
2529 Female, age 94, left hemisphere 185.8
1911 Female, age 85, right hemisphere 167.3
2148 Female, age 91, left hemisphere 159.4
1898 Male, age 80, left hemisphere 142.2
1855 Male, age 76, left hemisphere 139.1
Dentate gyrus
nTPM: 146.0
2531 Female, age 67, both hemispheres 202.3
1927 Female, age 91, both hemispheres 149.9
2528 Male, age 74, both hemispheres 137.9
2530 Female, age 94, left hemisphere 134.7
2246 Female, age 85, both hemispheres 129.1
2010 Male, age 76, both hemispheres 121.9
Entorhinal gyrus
nTPM: 144.9
2686 Male, age 75, right hemisphere 160.8
2613 Female, age 94, left hemisphere 155.6
2764 Male, age 80, right hemisphere 147.5
1787 Male, age 76, left hemisphere 142.0
1938 Female, age 85, left hemisphere 136.0
2117 Female, age 91, right hemisphere 127.5
Hippocampus, CA1
nTPM: 139.7
2527 Male, age 74, both hemispheres 159.1
1873 Female, age 85, both hemispheres 145.4
2749 Male, age 80, left hemisphere 145.4
2082 Female, age 91, right hemisphere 124.7
2045 Male, age 76, both hemispheres 123.7
Hippocampus, CA2
nTPM: 135.9
1963 Male, age 80, left hemisphere 174.4
2113 Female, age 91, right hemisphere 141.9
2437 Female, age 94, left hemisphere 132.5
1892 Male, age 76, both hemispheres 122.9
1940 Female, age 85, left hemisphere 122.1
2249 Male, age 74, both hemispheres 121.3
Hippocampus, CA3
nTPM: 164.7
2861 Female, age 67, both hemispheres 230.3
2620 Female, age 94, left hemisphere 201.3
2137 Male, age 80, left hemisphere 177.1
1867 Male, age 76, both hemispheres 137.0
1891 Female, age 85, both hemispheres 130.4
2436 Male, age 74, both hemispheres 111.9
Parahippocampal cortex
nTPM: 142.9
2622 Female, age 67, right hemisphere 175.2
2245 Female, age 91, both hemispheres 174.1
2532 Female, age 72, left hemisphere 146.0
1933 Female, age 85, both hemispheres 141.0
2250 Female, age 67, right hemisphere 138.4
2692 Male, age 74, both hemispheres 137.7
2018 Male, age 76, both hemispheres 133.6
2693 Female, age 94, both hemispheres 133.5
1850 Male, age 80, both hemispheres 125.9
1990 Female, age 91, right hemisphere 124.1
Perirhinal gyrus
nTPM: 140.5
1794 Male, age 80, right hemisphere 150.6
2521 Female, age 94, right hemisphere 143.5
1847 Female, age 91, left hemisphere 140.0
1841 Female, age 85, right hemisphere 137.4
2848 Male, age 76, right hemisphere 130.7
Subiculum
nTPM: 127.8
2619 Male, age 74, both hemispheres 146.3
2729 Female, age 91, right hemisphere 135.7
1901 Male, age 80, both hemispheres 125.8
2042 Male, age 76, both hemispheres 125.3
1977 Female, age 85, both hemispheres 125.0
2438 Female, age 94, left hemisphere 108.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 261.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 261.0
Samples: 197

Max nTPM: 823.6
Min nTPM: 52.5
Std nTPM: 128.9
Median nTPM: 247.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 823.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 747.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 698.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 676.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 608.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 560.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 554.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 551.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 490.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 489.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 487.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 482.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 481.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 468.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 453.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 429.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 428.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 426.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 424.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 416.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 414.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 410.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 406.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 402.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 398.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 398.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 397.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 393.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 392.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 380.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 376.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 372.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 370.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 368.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 368.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 363.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 355.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 354.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 350.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 350.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 343.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 341.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 339.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 336.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 335.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 335.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 333.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 327.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 323.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 320.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 316.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 315.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 315.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 313.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 312.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 310.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 310.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 309.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 306.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 305.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 303.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 302.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 293.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 293.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 291.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 284.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 282.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 280.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 277.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 275.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 274.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 272.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 271.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 271.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 271.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 270.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 270.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 269.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 268.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 268.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 267.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 267.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 267.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 266.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 266.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 265.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 261.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 257.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 257.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 255.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 254.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 251.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 251.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 250.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 249.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 248.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 248.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 247.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 247.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 246.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 245.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 244.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 237.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 237.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 232.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 231.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 230.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 229.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 226.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 225.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 221.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 220.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 218.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 216.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 216.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 216.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 216.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 215.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 214.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 213.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 212.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 210.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 203.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 203.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 202.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 199.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 199.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 198.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 197.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 195.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 192.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 191.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 190.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 189.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 189.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 189.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 188.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 188.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 184.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 184.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 184.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 182.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 177.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 174.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 170.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 168.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 167.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 162.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 160.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 160.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 159.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 159.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 158.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 157.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 155.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 154.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 152.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 152.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 151.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 150.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 148.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 143.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 142.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 137.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 137.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 136.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 136.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 135.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 134.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 132.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 132.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 132.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 131.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 131.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 129.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 128.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 127.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 124.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 121.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 120.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 120.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 116.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 115.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 115.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 109.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 108.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 105.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 104.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 104.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 88.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 83.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 82.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 77.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 75.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 63.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 61.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 52.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 131.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 131.7
FF:10153-102I9 76 years, female 168.2
FF:10169-103B7 60 years, female 95.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 115.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 77.5
Samples: 4

Max nTPM: 89.9
Min nTPM: 65.3
Sample A Female 89.9
Sample B Female 86.0
Sample C Male 65.3
Sample D Male 68.7
Entorhinal cortex
nTPM: 115.2
Samples: 4

Max nTPM: 153.1
Min nTPM: 91.7
Sample A Female 119.1
Sample B Female 91.7
Sample C Male 153.1
Sample D Male 97.0
Subiculum
nTPM: 90.0
Samples: 4

Max nTPM: 124.6
Min nTPM: 69.8
Sample A Female 124.6
Sample B Female 79.3
Sample C Male 86.1
Sample D Male 69.8
Ventral hippocampus
nTPM: 78.3
Samples: 4

Max nTPM: 101.3
Min nTPM: 54.9
Sample A Female 54.9
Sample B Female 61.3
Sample C Male 101.3
Sample D Male 95.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 124.3
Samples: 4

Max nTPM: 131.1
Min nTPM: 118.0
Sample A Male 131.1
Sample B Male 122.9
Sample C Female 118.0
Sample D Female 125.2
Hippocampal formation
nTPM: 98.5
Samples: 4

Max nTPM: 112.2
Min nTPM: 79.1
Sample A Male 109.3
Sample B Male 93.4
Sample C Female 79.1
Sample D Female 112.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.1
69059956 Antisense, RP_050317_04_G04, Mouse strain C57BL/6J (56 days, male) 10.1

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