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SMARCB1
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  • SMARCB1
TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2.5 nTPM
HPA:2.5 nTPM
GTEx:44.9 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:72.1 nTPM
Allen mouse:10.6 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA018248Antibody HPA019127Antibody CAB009196
Glial cells HighHighHigh
Neuronal cells HighHighMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 2.6
2289 Male, age 61, right hemisphere 2.2
2846 Female, age 79, unknown 1.9
2288 Male, age 75, left hemisphere 1.8
2290 Female, age 72, unknown 1.4
1781 Male, age 74, unknown 1.2
2481 Female, age 94, left hemisphere 1.0
1854 Male, age 80, left hemisphere 0.9
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 3.0
2292 Female, age 85, both hemispheres 2.2
1956 Male, age 74, unknown 2.0
2491 Male, age 75, both hemispheres 1.9
2568 Male, age 61, both hemispheres 1.8
2645 Female, age 72, unknown 1.7
2392 Female, age 94, both hemispheres 1.6
2284 Female, age 91, both hemispheres 1.3
2198 Male, age 80, both hemispheres 0.2
Globus pallidus, externus
nTPM: 2.5
1996 Male, age 80, right hemisphere 3.1
2772 Female, age 79, unknown 2.7
2567 Female, age 72, unknown 2.5
2395 Male, age 75, both hemispheres 2.4
2646 Male, age 61, right hemisphere 2.0
Globus pallidus, internus
nTPM: 1.8
2778 Female, age 91, both hemispheres 2.5
2111 Female, age 85, right hemisphere 1.9
2483 Female, age 94, right hemisphere 1.9
2037 Male, age 80, right hemisphere 1.7
2287 Male, age 75, right hemisphere 1.7
1818 Male, age 74, unknown 1.4
2566 Female, age 72, unknown 1.4
Nucleus accumbens
nTPM: 1.0
2391 Female, age 94, left hemisphere 2.6
2286 Male, age 75, left hemisphere 1.9
1806 Female, age 85, left hemisphere 1.1
1856 Female, age 91, right hemisphere 0.8
2732 Male, age 80, right hemisphere 0.8
2824 Male, age 61, right hemisphere 0.5
1783 Male, age 74, unknown 0.4
2698 Female, age 72, unknown 0.4
Nucleus basalis of Meynert
nTPM: 1.9
2569 Male, age 61, both hemispheres 2.4
2484 Female, age 94, left hemisphere 2.0
2821 Male, age 75, both hemispheres 1.9
2393 Male, age 80, right hemisphere 1.3
Nucleus of the diagonal band
nTPM: 1.2
2775 Male, age 80, right hemisphere 1.7
2029 Male, age 61, right hemisphere 1.3
1979 Male, age 74, unknown 1.2
1812 Female, age 91, both hemispheres 0.9
2195 Female, age 85, both hemispheres 0.6
Olfactory tubercle
nTPM: 2.1
1846 Male, age 80, right hemisphere 5.3
2487 Female, age 94, left hemisphere 1.3
1998 Female, age 91, both hemispheres 1.1
2856 Male, age 75, right hemisphere 0.8
Putamen
nTPM: 2.0
1838 Male, age 80, right hemisphere 6.5
2466 Female, age 79, unknown 1.7
2647 Male, age 75, left hemisphere 1.5
2482 Female, age 94, left hemisphere 1.2
1937 Female, age 91, right hemisphere 1.1
2489 Female, age 72, unknown 1.1
1829 Male, age 74, unknown 0.7
Septal nuclei
nTPM: 1.4
1960 Male, age 74, unknown 3.6
2199 Male, age 80, right hemisphere 1.8
2009 Female, age 91, both hemispheres 1.7
2031 Female, age 72, unknown 1.1
2059 Female, age 85, both hemispheres 0.8
2394 Male, age 61, left hemisphere 0.8
2629 Female, age 94, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Max average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.1
Samples: 246

Max nTPM: 66.0
Min nTPM: 25.4
Std nTPM: 6.3
Median nTPM: 42.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 66.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 64.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 62.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 60.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 58.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 57.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 56.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 56.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 55.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 55.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 54.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 54.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 54.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 54.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 52.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 52.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 52.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 51.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 51.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 51.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 51.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 50.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 50.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 50.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 49.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 49.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 49.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 49.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 48.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 48.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 48.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 48.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 48.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 48.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 48.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 48.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 47.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 47.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 47.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 47.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 47.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 47.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 47.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 47.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 47.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 46.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 46.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 46.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 46.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 46.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 46.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 46.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 45.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 45.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 45.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 45.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 45.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 45.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 45.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 45.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 45.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 45.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 45.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 45.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 45.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 45.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 45.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 44.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 44.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 44.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 44.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 44.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 44.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 44.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 44.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 44.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 44.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 44.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 44.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 44.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 44.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 44.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 44.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 43.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 43.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 43.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 43.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 43.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 43.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 43.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 43.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 43.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 43.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 43.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 43.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 43.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 43.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 43.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 43.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 43.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 43.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 43.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 42.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 42.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 42.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 42.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 42.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 42.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 42.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 42.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 42.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 42.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 42.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 42.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 42.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 42.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 42.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 42.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 42.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 42.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 42.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 41.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 41.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 41.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 41.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 41.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 41.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 41.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 41.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 41.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 41.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 41.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 41.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 41.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 41.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 41.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 40.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 40.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 40.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 40.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 40.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 40.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 40.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 40.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 40.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 40.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 40.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 40.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 40.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 40.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 40.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 39.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 39.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 39.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 39.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 39.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 39.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 39.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 39.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 39.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 39.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 39.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 39.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 39.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 38.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 38.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 38.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 38.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 38.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 38.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 38.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 38.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 38.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 38.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 38.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 38.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 38.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 38.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 37.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 37.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 37.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 37.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 37.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 37.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 37.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 36.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 36.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 36.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 36.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 36.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 36.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 36.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 35.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 35.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 35.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 35.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 35.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 35.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 35.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 35.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 34.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 34.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 33.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 33.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 33.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 33.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 33.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 33.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 33.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 32.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 32.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 32.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 32.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 30.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 29.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 29.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 25.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.9
Samples: 246

Max nTPM: 66.1
Min nTPM: 30.5
Std nTPM: 6.3
Median nTPM: 44.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 63.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 63.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 61.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 60.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 59.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 58.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 58.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 57.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 57.3
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 56.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 56.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 56.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 56.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 55.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 54.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 54.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 53.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 53.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 53.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 53.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 53.1
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 53.0
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 52.9
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 52.9
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 52.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 52.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 52.3
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 52.3
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 52.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 52.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 52.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 51.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 51.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 51.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 51.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 51.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 51.4
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 51.1
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 51.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 51.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 50.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 50.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 50.4
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 50.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 50.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 50.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 50.1
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 49.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 49.7
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 49.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 49.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 49.6
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 49.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 49.5
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 49.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 49.4
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 49.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 49.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 49.3
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 49.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 49.0
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 49.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 48.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 48.7
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 48.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 48.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 48.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 48.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 48.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 48.3
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 48.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 48.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 47.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 47.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 47.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 47.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 47.4
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 47.4
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 47.3
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 47.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 47.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 47.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 46.9
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 46.9
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 46.9
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 46.6
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 46.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 46.5
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 46.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 46.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 46.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 46.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 46.1
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 46.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 46.0
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 46.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 45.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 45.9
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 45.9
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 45.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 45.8
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 45.8
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 45.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 45.7
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 45.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 45.5
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 45.5
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 45.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 45.4
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 45.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 45.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 45.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 45.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 45.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 45.2
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 45.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 45.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 45.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 45.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 44.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 44.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 44.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 44.4
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 44.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 44.4
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 44.3
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 44.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 44.3
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 43.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 43.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 43.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 43.6
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 43.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 43.6
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 43.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 43.4
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 43.4
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 43.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 43.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 43.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 43.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 43.3
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 43.2
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 43.1
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 43.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 42.9
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 42.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 42.7
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 42.6
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 42.6
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 42.5
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 42.5
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 42.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 42.4
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 42.2
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 42.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 42.0
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 42.0
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 42.0
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 42.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 41.9
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 41.8
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 41.7
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 41.6
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 41.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 41.5
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 41.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 41.5
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 41.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 41.3
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 41.3
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 41.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 41.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 41.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 41.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 41.1
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 41.0
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 41.0
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 41.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 41.0
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 40.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 40.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 40.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 40.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 40.2
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 40.2
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 40.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 40.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 39.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 39.8
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 39.7
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 39.7
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 39.6
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 39.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 39.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 39.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 39.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 38.9
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 38.7
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 38.7
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 38.7
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 38.6
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 38.6
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 38.5
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 38.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 38.3
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 38.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 38.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 37.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 37.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 37.7
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 37.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 37.6
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 37.6
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 37.5
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 37.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 37.4
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 37.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 37.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 37.1
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 37.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 37.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 36.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 36.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 36.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 36.6
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 36.3
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 35.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 35.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 35.5
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 35.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 35.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 35.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 35.1
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 34.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 34.9
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 34.8
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 34.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 34.6
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 34.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 33.8
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 33.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 32.6
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 30.5
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Brain - Putamen (basal ganglia)
Average nTPM: 43.2
Samples: 205

Max nTPM: 65.4
Min nTPM: 28.9
Std nTPM: 6.4
Median nTPM: 42.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 65.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 65.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 59.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 59.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 56.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 55.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 55.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 54.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 54.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 54.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 53.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 52.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 52.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 52.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 52.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 52.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 52.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 51.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 51.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 51.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 51.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 50.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 50.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 50.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 50.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 50.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 50.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 49.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 49.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 49.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 49.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 49.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 48.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 48.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 48.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 48.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 48.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 48.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 48.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 47.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 47.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 47.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 47.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 47.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 47.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 47.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 47.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 46.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 46.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 46.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 46.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 46.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 46.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 46.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 46.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 46.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 46.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 45.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 45.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 45.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 45.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 45.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 45.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 45.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 44.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 44.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 44.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 44.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 44.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 44.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 44.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 44.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 44.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 44.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 44.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 44.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 44.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 44.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 44.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 44.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 44.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 44.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 44.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 44.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 44.0
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 43.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 43.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 43.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 43.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 43.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 43.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 43.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 43.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 43.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 43.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 43.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 43.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 42.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 42.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 42.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 42.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 42.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 42.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 42.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 42.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 42.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 42.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 42.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 41.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 41.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 41.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 41.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 41.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 41.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 41.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 41.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 41.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 41.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 41.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 41.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 41.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 41.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 41.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 41.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 41.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 41.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 41.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 40.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 40.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 40.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 40.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 40.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 40.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 40.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 40.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 40.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 40.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 40.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 39.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 39.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 39.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 39.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 39.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 39.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 39.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 39.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 39.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 39.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 39.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 38.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 38.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 38.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 38.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 38.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 37.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 37.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 37.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 37.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 37.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 37.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 37.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 37.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 36.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 36.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 36.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 36.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 36.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 36.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 36.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 36.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 36.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 36.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 36.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 36.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 36.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 36.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 36.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 35.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 35.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 35.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 35.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 35.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 34.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 34.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 34.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 34.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 34.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 33.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 33.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 33.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 32.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 32.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 32.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 32.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 32.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 31.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 31.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 31.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 29.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 28.9
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.7
FF:10164-103B2 76 years, female 59.7
Globus pallidus
Scaled Tags Per Million: 59.4
FF:10161-103A8 76 years, female 62.1
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 61.9
FF:10037-101F1 23-56 years, mixed 61.9
Putamen
Scaled Tags Per Million: 58.8
FF:10176-103C5 60 years, female 58.8

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 34.2
Pig sample Sample description nTPM
Caudate
nTPM: 34.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 35.3
Sample C Male 38.4
Sample D Male 31.8
Putamen
nTPM: 34.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 26.5
Sample A Female 34.0
Sample B Female 26.5
Sample C Male 40.0
Sample D Male 36.1
Septum
nTPM: 34.0
Samples: 4

Max nTPM: 36.3
Min nTPM: 31.3
Sample A Female 36.3
Sample B Female 31.3
Sample C Male 34.7
Sample D Male 33.8
Ventral pallidum
nTPM: 33.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 37.1
Sample C Male 33.7
Sample D Male 32.7

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 72.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.1
Samples: 4

Max nTPM: 73.8
Min nTPM: 70.7
Sample A Male 71.9
Sample B Male 72.0
Sample C Female 70.7
Sample D Female 73.8
Septum
nTPM: 62.6
Samples: 4

Max nTPM: 65.6
Min nTPM: 58.5
Sample A Male 65.6
Sample B Male 64.3
Sample C Female 61.8
Sample D Female 58.5
Ventral forebrain
nTPM: 68.6
Samples: 4

Max nTPM: 71.6
Min nTPM: 64.5
Sample A Male 71.6
Sample B Male 68.2
Sample C Female 64.5
Sample D Female 70.1

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.6
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 10.6
Pallidum
Expression energy: 8.0
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 8.0

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