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SMARCB1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:1.9 nTPM
HPA:1.9 nTPM
GTEx:40.5 nTPM
FANTOM5:62.2 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:68.4 nTPM
Allen mouse:12.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018248Antibody HPA019127Antibody CAB009196
Glial cells HighHighMedium
Neuronal cells HighHighMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 1.9
Sample id Sample description nTPM
Hippocampus
nTPM: 1.8
2621 Female, age 67, right hemisphere 3.2
1911 Female, age 85, right hemisphere 2.2
1898 Male, age 80, left hemisphere 2.1
2529 Female, age 94, left hemisphere 2.0
1855 Male, age 76, left hemisphere 1.5
2148 Female, age 91, left hemisphere 1.2
2860 Male, age 74, right hemisphere 0.7
Dentate gyrus
nTPM: 1.3
2246 Female, age 85, both hemispheres 2.6
2531 Female, age 67, both hemispheres 1.8
2530 Female, age 94, left hemisphere 1.3
1927 Female, age 91, both hemispheres 0.8
2528 Male, age 74, both hemispheres 0.8
2010 Male, age 76, both hemispheres 0.6
Entorhinal gyrus
nTPM: 1.3
2764 Male, age 80, right hemisphere 2.1
1787 Male, age 76, left hemisphere 2.0
1938 Female, age 85, left hemisphere 1.2
2613 Female, age 94, left hemisphere 1.2
2686 Male, age 75, right hemisphere 0.9
2117 Female, age 91, right hemisphere 0.3
Hippocampus, CA1
nTPM: 1.9
1873 Female, age 85, both hemispheres 4.0
2343 Female, age 94, left hemisphere 2.2
2045 Male, age 76, both hemispheres 2.1
2527 Male, age 74, both hemispheres 1.7
2749 Male, age 80, left hemisphere 1.6
2082 Female, age 91, right hemisphere 0.1
Hippocampus, CA2
nTPM: 1.2
2342 Male, age 74, both hemispheres 2.4
1963 Male, age 80, left hemisphere 1.3
2113 Female, age 91, right hemisphere 1.3
2437 Female, age 94, left hemisphere 1.1
1892 Male, age 76, both hemispheres 0.9
1940 Female, age 85, left hemisphere 0.0
Hippocampus, CA3
nTPM: 1.6
1867 Male, age 76, both hemispheres 4.9
2620 Female, age 94, left hemisphere 2.4
1891 Female, age 85, both hemispheres 1.2
2137 Male, age 80, left hemisphere 0.9
2861 Female, age 67, both hemispheres 0.2
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 0.7
2532 Female, age 72, left hemisphere 1.5
2245 Female, age 91, both hemispheres 1.1
2692 Male, age 74, both hemispheres 1.0
1933 Female, age 85, both hemispheres 0.9
2018 Male, age 76, both hemispheres 0.8
2693 Female, age 94, both hemispheres 0.8
2622 Female, age 67, right hemisphere 0.4
1850 Male, age 80, both hemispheres 0.3
2718 Female, age 67, right hemisphere 0.3
1990 Female, age 91, right hemisphere 0.2
Perirhinal gyrus
nTPM: 1.6
1841 Female, age 85, right hemisphere 3.3
1847 Female, age 91, left hemisphere 2.4
2519 Male, age 75, right hemisphere 1.5
2848 Male, age 76, right hemisphere 1.2
1794 Male, age 80, right hemisphere 0.5
2521 Female, age 94, right hemisphere 0.4
Subiculum
nTPM: 0.8
2729 Female, age 91, right hemisphere 1.8
2619 Male, age 74, both hemispheres 1.5
2042 Male, age 76, both hemispheres 1.2
1901 Male, age 80, both hemispheres 0.6
1977 Female, age 85, both hemispheres 0.3
2702 Female, age 67, right hemisphere 0.3
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.5
Samples: 197

Max nTPM: 64.2
Min nTPM: 23.1
Std nTPM: 5.9
Median nTPM: 40.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 64.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 58.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 57.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 55.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 53.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 53.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 53.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 53.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 52.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 51.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.2
FF:10169-103B7 60 years, female 64.8
FF:10153-102I9 76 years, female 59.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 51.1
Min nTPM: 35.8
Sample A Female 51.1
Sample B Female 42.1
Sample C Male 35.8
Sample D Male 39.7
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 23.3
Sample A Female 34.1
Sample B Female 32.1
Sample C Male 29.9
Sample D Male 23.3
Subiculum
nTPM: 31.7
Samples: 4

Max nTPM: 41.5
Min nTPM: 27.0
Sample A Female 41.5
Sample B Female 29.6
Sample C Male 28.5
Sample D Male 27.0
Ventral hippocampus
nTPM: 37.8
Samples: 4

Max nTPM: 44.3
Min nTPM: 29.8
Sample A Female 35.9
Sample B Female 29.8
Sample C Male 44.3
Sample D Male 41.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 61.0
Samples: 4

Max nTPM: 62.4
Min nTPM: 59.0
Sample A Male 59.0
Sample B Male 62.0
Sample C Female 62.4
Sample D Female 60.6
Hippocampal formation
nTPM: 68.4
Samples: 4

Max nTPM: 69.9
Min nTPM: 67.1
Sample A Male 69.9
Sample B Male 67.1
Sample C Female 67.1
Sample D Female 69.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.4
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 12.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.