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SMARCB1
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  • SMARCB1
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2.3 nTPM
HPA:2.3 nTPM
GTEx:40.2 nTPM
FANTOM5:62.2 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:68.4 nTPM
Allen mouse:12.4 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA018248Antibody HPA019127Antibody CAB009196
Glial cells HighHighMedium
Neuronal cells HighHighMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2.3
Sample id Sample description nTPM
Hippocampus
nTPM: 2.3
2621 Female, age 67, right hemisphere 3.6
1898 Male, age 80, left hemisphere 2.3
1911 Female, age 85, right hemisphere 2.3
2529 Female, age 94, left hemisphere 2.3
1855 Male, age 76, left hemisphere 1.8
2148 Female, age 91, left hemisphere 1.6
Dentate gyrus
nTPM: 1.6
2246 Female, age 85, both hemispheres 2.8
2531 Female, age 67, both hemispheres 2.2
2530 Female, age 94, left hemisphere 1.6
1927 Female, age 91, both hemispheres 1.1
2528 Male, age 74, both hemispheres 1.1
2010 Male, age 76, both hemispheres 0.9
Entorhinal gyrus
nTPM: 1.6
1787 Male, age 76, left hemisphere 2.3
2764 Male, age 80, right hemisphere 2.3
1938 Female, age 85, left hemisphere 1.4
2613 Female, age 94, left hemisphere 1.4
2686 Male, age 75, right hemisphere 1.2
2117 Female, age 91, right hemisphere 0.7
Hippocampus, CA1
nTPM: 2.2
1873 Female, age 85, both hemispheres 4.1
2045 Male, age 76, both hemispheres 2.4
2527 Male, age 74, both hemispheres 2.1
2749 Male, age 80, left hemisphere 1.8
2082 Female, age 91, right hemisphere 0.4
Hippocampus, CA2
nTPM: 1.2
2113 Female, age 91, right hemisphere 1.7
1963 Male, age 80, left hemisphere 1.5
2437 Female, age 94, left hemisphere 1.4
1892 Male, age 76, both hemispheres 1.2
2249 Male, age 74, both hemispheres 1.0
1940 Female, age 85, left hemisphere 0.2
Hippocampus, CA3
nTPM: 1.9
1867 Male, age 76, both hemispheres 5.3
2620 Female, age 94, left hemisphere 2.7
1891 Female, age 85, both hemispheres 1.4
2137 Male, age 80, left hemisphere 1.1
2861 Female, age 67, both hemispheres 0.6
2436 Male, age 74, both hemispheres 0.4
Parahippocampal cortex
nTPM: 1.1
2532 Female, age 72, left hemisphere 1.8
2250 Female, age 67, right hemisphere 1.6
2245 Female, age 91, both hemispheres 1.4
2692 Male, age 74, both hemispheres 1.4
1933 Female, age 85, both hemispheres 1.1
2018 Male, age 76, both hemispheres 1.1
2693 Female, age 94, both hemispheres 1.1
2622 Female, age 67, right hemisphere 0.7
1850 Male, age 80, both hemispheres 0.6
1990 Female, age 91, right hemisphere 0.5
Perirhinal gyrus
nTPM: 1.8
1841 Female, age 85, right hemisphere 3.5
1847 Female, age 91, left hemisphere 2.7
2848 Male, age 76, right hemisphere 1.5
1794 Male, age 80, right hemisphere 0.8
2521 Female, age 94, right hemisphere 0.7
Subiculum
nTPM: 1.1
2729 Female, age 91, right hemisphere 2.2
2619 Male, age 74, both hemispheres 1.9
2042 Male, age 76, both hemispheres 1.5
1901 Male, age 80, both hemispheres 0.8
1977 Female, age 85, both hemispheres 0.5
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.2
Samples: 197

Max nTPM: 63.8
Min nTPM: 22.9
Std nTPM: 5.9
Median nTPM: 40.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 63.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 57.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 57.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 55.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 53.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 53.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 52.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 52.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 51.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 51.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 49.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 49.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 49.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 48.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 48.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 47.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 47.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 47.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 46.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 46.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 46.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 45.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 45.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 45.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 45.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 45.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 45.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 45.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 45.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 45.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 45.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 45.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 44.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 44.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 44.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 44.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 44.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 44.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 44.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 44.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 44.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 44.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 44.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 44.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 44.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 43.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 43.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 43.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 43.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 43.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 43.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 43.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 43.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 43.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 42.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 42.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 42.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 42.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 42.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 42.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 42.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 42.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 42.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 42.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 42.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 42.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 41.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 41.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 41.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 41.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 41.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 41.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 41.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 41.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 41.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 41.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 41.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 41.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 41.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 41.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 41.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 41.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 41.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 41.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 41.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 40.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 40.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 40.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 40.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 40.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 40.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 40.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 40.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 40.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 40.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 40.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 40.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 40.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 40.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 40.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 40.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 39.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 39.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 39.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 39.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 39.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 39.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 39.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 38.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 38.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 38.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 38.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 38.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 38.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 38.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 38.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 38.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 38.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 38.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 38.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 38.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 38.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 38.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 37.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 37.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 37.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 37.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 37.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 37.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 37.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 37.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 37.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 37.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 37.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 37.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 37.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 37.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 36.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 36.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 36.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 36.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 36.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 36.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 36.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 36.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 36.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 36.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 36.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 36.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 36.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 35.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 35.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 35.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 35.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 35.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 35.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 35.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 35.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 35.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 35.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 35.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 34.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 34.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 34.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 34.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 34.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 34.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 34.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 34.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 34.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 34.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 33.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 33.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 33.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 33.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 32.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 32.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 32.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 31.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 31.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 31.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 31.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 31.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 30.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 30.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 30.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 29.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 27.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 27.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 27.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 25.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 22.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 62.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.2
FF:10169-103B7 60 years, female 64.8
FF:10153-102I9 76 years, female 59.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 42.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 51.1
Min nTPM: 35.8
Sample A Female 51.1
Sample B Female 42.1
Sample C Male 35.8
Sample D Male 39.7
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 23.3
Sample A Female 34.1
Sample B Female 32.1
Sample C Male 29.9
Sample D Male 23.3
Subiculum
nTPM: 31.7
Samples: 4

Max nTPM: 41.5
Min nTPM: 27.0
Sample A Female 41.5
Sample B Female 29.6
Sample C Male 28.5
Sample D Male 27.0
Ventral hippocampus
nTPM: 37.8
Samples: 4

Max nTPM: 44.3
Min nTPM: 29.8
Sample A Female 35.9
Sample B Female 29.8
Sample C Male 44.3
Sample D Male 41.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 61.0
Samples: 4

Max nTPM: 62.4
Min nTPM: 59.0
Sample A Male 59.0
Sample B Male 62.0
Sample C Female 62.4
Sample D Female 60.6
Hippocampal formation
nTPM: 68.4
Samples: 4

Max nTPM: 69.9
Min nTPM: 67.1
Sample A Male 69.9
Sample B Male 67.1
Sample C Female 67.1
Sample D Female 69.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.4
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 12.4

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