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SMARCB1
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TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ovarian stroma cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:63.1 nTPM
HPA:1.1 nTPM
GTEx:63.1 nTPM
FANTOM5:78.8 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA018248Antibody HPA019127Antibody CAB009196
Follicle cells -HighMedium
Ovarian stroma cells HighHighLow







OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1.1
overview
Female, age 64
Ovary sample 192
nTPM: 1.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 0.9
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 1.2
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5


OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.1
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 63.1
Samples: 180

Max nTPM: 133.5
Min nTPM: 21.6
Std nTPM: 15.6
Median nTPM: 64.5
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 133.5
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 103.9
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 94.5
GTEX-13SLX-2426-SM-664OM 50-59 years, female 93.1
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 92.6
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 92.5
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 92.4
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 89.6
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 87.1
GTEX-P78B-1926-SM-3P616 40-49 years, female 86.3
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 85.4
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 85.4
GTEX-11I78-1926-SM-59878 50-59 years, female 85.2
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 84.6
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 83.3
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 82.9
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 82.7
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 81.5
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 81.0
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 80.2
GTEX-14BIN-1426-SM-664NI 50-59 years, female 79.6
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 79.5
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 78.6
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 78.0
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 78.0
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 77.8
GTEX-S341-0726-SM-4AD5R 40-49 years, female 77.8
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 77.6
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 77.4
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 77.2
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 76.7
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 76.6
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 76.2
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 75.8
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 75.2
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 75.1
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 74.4
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 74.3
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 73.9
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 73.8
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 73.7
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 73.2
GTEX-RU72-2226-SM-46MUE 50-59 years, female 72.9
GTEX-14JG6-0626-SM-68716 30-39 years, female 72.8
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 72.8
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 72.4
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 72.4
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 71.9
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 71.7
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 71.6
GTEX-Q734-0726-SM-48TZP 40-49 years, female 71.4
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 71.4
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 70.7
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 70.1
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 70.1
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 69.8
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 69.6
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 69.5
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 69.3
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 68.9
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 68.7
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 68.7
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 68.5
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 68.5
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 68.3
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 68.2
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 68.2
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 67.6
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 67.6
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 67.5
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 67.2
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 67.1
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 67.1
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 67.1
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 66.9
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 66.5
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 66.4
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 66.4
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 66.3
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 66.3
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 66.3
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 66.2
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 66.0
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 65.5
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 65.5
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 65.4
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 65.3
GTEX-15EOM-1526-SM-68723 20-29 years, female 65.3
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 64.8
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 64.6
GTEX-QCQG-1426-SM-48U22 50-59 years, female 64.4
GTEX-18D9A-0826-SM-718C1 30-39 years, female 64.2
GTEX-S32W-1226-SM-4AD67 50-59 years, female 63.9
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 63.7
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 63.3
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 63.2
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 63.2
GTEX-QVJO-3126-SM-COH22 60-69 years, female 62.9
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 62.8
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 62.5
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 62.4
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 62.1
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 61.8
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 61.7
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 61.7
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 61.5
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 61.3
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 61.2
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 61.2
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 61.1
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 60.5
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 60.4
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 59.9
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 59.4
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 58.4
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 58.3
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 57.6
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 57.2
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 57.0
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 56.6
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 56.5
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 56.2
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 56.1
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 55.8
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 55.1
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 54.5
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 54.5
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 53.8
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 53.3
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 53.3
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 53.2
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 53.2
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 53.2
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 52.9
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 52.6
GTEX-14PKV-1226-SM-6871T 20-29 years, female 52.4
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 52.3
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 52.2
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 52.0
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 51.8
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 51.6
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 50.9
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 50.7
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 50.7
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 50.3
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 49.9
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 49.3
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 49.3
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 49.2
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 49.1
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 49.0
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 47.8
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 47.7
GTEX-183WM-1926-SM-72D5F 70-79 years, female 47.0
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 46.9
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 46.4
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 45.7
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 45.4
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 45.0
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 44.9
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 42.9
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 42.8
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 42.7
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 42.0
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 40.7
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 40.4
GTEX-R55G-1526-SM-48FER 40-49 years, female 39.9
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 39.8
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 37.7
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 37.0
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 36.3
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 36.2
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 35.4
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 35.1
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 34.9
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 33.7
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 33.3
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 28.3
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 25.8
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 21.6
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 78.8
FF:10020-101D2 47,75,84 years, female 78.8

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