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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:33.7 nTPM
HPA:6.7 nTPM
GTEx:33.7 nTPM
FANTOM5:32.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB037234
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 6.7
overview
Male, age 65
Small intestine sample 232
nTPM: 10.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 6.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 6.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 33.7
Samples: 187

Max nTPM: 166.8
Min nTPM: 0.2
Std nTPM: 26.2
Median nTPM: 31.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 166.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 148.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 105.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 99.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 93.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 89.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 88.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 85.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 83.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 79.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 76.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 74.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 70.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 69.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 67.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 67.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 65.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 65.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 64.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 62.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 60.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 60.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 58.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 57.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 57.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 56.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 56.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 56.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 55.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 55.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 54.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 54.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 54.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 53.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 53.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 53.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 52.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 52.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 52.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 49.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 49.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 48.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 48.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 48.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 48.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 47.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 46.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 46.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 46.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 46.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 46.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 45.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 44.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 44.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 42.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 42.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 42.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 42.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 40.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 39.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 39.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 39.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 39.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 38.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 38.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 38.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 38.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 37.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 37.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 37.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 37.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 36.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 36.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 35.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 35.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 35.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 34.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 34.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 34.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 34.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 34.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 33.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 33.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 33.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 33.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 33.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 33.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 32.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 32.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 32.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 32.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 31.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 31.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 30.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 30.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 29.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 29.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 29.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 29.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 29.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 29.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 28.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 27.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 26.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 25.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 25.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 25.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 24.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 23.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 23.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 23.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 23.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 23.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 22.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 22.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 22.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 22.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 22.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 21.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 21.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 21.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 21.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 21.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 20.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 19.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 19.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 18.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 18.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 18.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 17.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 17.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 17.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 16.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 16.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 16.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 16.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 15.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 15.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 15.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 14.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 14.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 13.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 13.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 12.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 12.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 12.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 12.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 9.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 8.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 8.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 7.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 7.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 6.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 6.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 6.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 3.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3.6
GTEX-1192X-2526-SM-59868 50-59 years, male 3.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 2.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 32.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 32.4
FF:10024-101D6 15,40,85 years, mixed 32.4

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The Human Protein Atlas project is funded
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