MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA:46.3 nTPM
GTEx:37.8 nTPM
Pig:5.6 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
2586 Male, age 75, left hemisphere 48.8
2666 Male, age 74, left hemisphere 48.1
1830 Male, age 51, unknown 43.8
2019 Male, age 18, unknown 41.9
1870 Female, age 42, unknown 41.6
1833 Male, age 53, unknown 40.9
2828 Female, age 72, unknown 40.6
1827 Male, age 72, unknown 38.7
2411 Female, age 72, unknown 38.6
2219 Male, age 76, both hemispheres 35.0
Dorsal raphe nucleus
nTPM: 41.6
2750 Male, age 76, both hemispheres 47.9
2047 Male, age 72, unknown 43.9
1828 Male, age 53, unknown 40.4
2016 Female, age 72, unknown 38.0
2298 Female, age 72, unknown 37.8
Inferior colliculus
nTPM: 37.8
1890 Male, age 53, unknown 38.2
2849 Male, age 72, unknown 38.0
1848 Female, age 42, unknown 37.7
2097 Female, age 72, unknown 37.1
Median raphe nucleus
nTPM: 46.3
2220 Male, age 76, midline 46.3
Pedunculopontine tegmental nucleus
nTPM: 41.1
2334 Male, age 80, both hemispheres 45.6
2338 Male, age 61, both hemispheres 41.2
1921 Female, age 85, both hemispheres 36.6
Periaquaductal grey, anterior
nTPM: 41.3
1795 Male, age 51, unknown 43.4
2502 Female, age 75, unknown 40.4
1947 Male, age 18, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 39.2
2850 Male, age 76, both hemispheres 43.2
1831 Male, age 72, unknown 40.6
2464 Female, age 72, unknown 37.3
1840 Male, age 53, unknown 35.9
Periaquaductal grey, lateral
nTPM: 42.8
2140 Male, age 76, both hemispheres 45.7
2053 Male, age 18, unknown 43.2
2272 Male, age 74, both hemispheres 39.7
Pretectal area
nTPM: 38.0
2316 Male, age 76, right hemisphere 44.5
1817 Female, age 42, unknown 42.8
2224 Female, age 72, unknown 41.1
2825 Male, age 18, unknown 39.4
2007 Male, age 72, unknown 37.9
2667 Female, age 75, unknown 37.2
1815 Male, age 53, unknown 36.7
1944 Female, age 72, unknown 36.3
2407 Male, age 75, both hemispheres 35.7
1816 Male, age 51, unknown 34.3
2273 Male, age 74, both hemispheres 32.0
Red nucleus
nTPM: 42.8
2588 Male, age 74, left hemisphere 47.5
2823 Male, age 76, right hemisphere 46.2
2227 Male, age 72, unknown 44.8
2769 Male, age 72, unknown 43.8
1904 Male, age 53, unknown 43.6
1821 Female, age 72, unknown 43.5
1954 Female, age 42, unknown 42.9
2725 Female, age 75, unknown 42.4
2785 Male, age 18, unknown 42.1
2584 Male, age 75, left hemisphere 40.7
1865 Male, age 51, unknown 39.9
2503 Female, age 72, unknown 36.2
Substantia nigra
nTPM: 41.3
2665 Male, age 74, both hemispheres 48.0
2699 Male, age 18, unknown 45.2
1851 Male, age 51, unknown 44.4
1941 Male, age 53, unknown 41.6
2409 Female, age 72, unknown 40.4
1889 Female, age 72, unknown 39.4
2583 Male, age 75, right hemisphere 39.1
2590 Female, age 75, unknown 39.0
1916 Female, age 42, unknown 38.6
2241 Male, age 72, unknown 37.9
Superior colliculus
nTPM: 37.4
2087 Female, age 72, unknown 40.7
2668 Female, age 75, unknown 40.5
1839 Male, age 51, unknown 38.4
2587 Male, age 74, left hemisphere 37.6
1796 Male, age 53, unknown 37.4
1895 Male, age 76, right hemisphere 37.4
2664 Male, age 75, both hemispheres 36.2
1995 Male, age 72, unknown 36.1
1913 Female, age 42, unknown 35.9
2261 Male, age 18, unknown 33.7
Ventral tegmental area
nTPM: 45.0
2218 Male, age 76, both hemispheres 52.6
2021 Male, age 53, unknown 49.9
2223 Female, age 72, unknown 45.2
1942 Male, age 51, unknown 42.8
1915 Female, age 42, unknown 42.0
2410 Female, age 72, unknown 37.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 139

Max nTPM: 145.9
Min nTPM: 9.2
Std nTPM: 23.1
Median nTPM: 30.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 145.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 131.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 112.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 105.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 99.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 90.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 85.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 85.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.5
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MIDBRAIN - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.7
Sample A Female 5.9
Sample B Female 4.5
Sample C Male 4.2
Sample D Male 3.7
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.1
Sample B Female 5.4
Sample C Male 4.1
Sample D Male 4.1
Substantia nigra
nTPM: 5.6
Samples: 4

Max nTPM: 7.9
Min nTPM: 4.1
Sample A Female 4.8
Sample B Female 7.9
Sample C Male 4.1
Sample D Male 5.5
Superior colliculi
nTPM: 5.2
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.6
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 4.8
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.3
Sample A Male 1.0
Sample B Male 0.3
Sample C Female 0.9
Sample D Female 0.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69672874 Antisense, RP_050428_04_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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