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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:34.3 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:22.5 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA064466
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.7
2302 Male, age 61, right hemisphere 42.3
2306 Female, age 91, right hemisphere 33.3
1854 Male, age 80, left hemisphere 33.0
2481 Female, age 94, left hemisphere 32.1
1781 Male, age 74, unknown 29.5
1857 Female, age 85, left hemisphere 29.4
2713 Male, age 75, left hemisphere 28.5
2301 Female, age 72, unknown 24.6
2846 Female, age 79, unknown 24.0
Claustrum
nTPM: 26.1
2299 Female, age 85, both hemispheres 35.4
2645 Female, age 72, unknown 27.1
2491 Male, age 75, both hemispheres 26.2
2196 Female, age 79, unknown 26.1
2568 Male, age 61, both hemispheres 25.7
1956 Male, age 74, unknown 25.5
2392 Female, age 94, both hemispheres 24.5
2198 Male, age 80, both hemispheres 23.9
2307 Female, age 91, both hemispheres 20.7
Globus pallidus, externus
nTPM: 37.8
1996 Male, age 80, right hemisphere 49.5
2646 Male, age 61, right hemisphere 47.2
2567 Female, age 72, unknown 41.2
2772 Female, age 79, unknown 37.7
2114 Female, age 85, right hemisphere 36.1
2011 Female, age 91, left hemisphere 33.4
2395 Male, age 75, both hemispheres 30.2
2644 Female, age 94, right hemisphere 27.3
Globus pallidus, internus
nTPM: 37.7
1818 Male, age 74, unknown 46.7
2037 Male, age 80, right hemisphere 46.6
2483 Female, age 94, right hemisphere 43.4
2111 Female, age 85, right hemisphere 36.0
2778 Female, age 91, both hemispheres 35.4
2566 Female, age 72, unknown 34.5
2714 Male, age 75, right hemisphere 33.8
1997 Male, age 61, left hemisphere 24.9
Nucleus accumbens
nTPM: 27.4
1806 Female, age 85, left hemisphere 30.6
2305 Male, age 75, left hemisphere 29.0
2732 Male, age 80, right hemisphere 28.8
2391 Female, age 94, left hemisphere 28.6
1783 Male, age 74, unknown 26.4
2824 Male, age 61, right hemisphere 25.6
1856 Female, age 91, right hemisphere 25.0
2698 Female, age 72, unknown 25.0
Nucleus basalis of Meynert
nTPM: 29.8
2569 Male, age 61, both hemispheres 48.9
2842 Male, age 74, unknown 35.6
2393 Male, age 80, right hemisphere 28.6
2484 Female, age 94, left hemisphere 24.3
2200 Female, age 91, left hemisphere 24.2
2300 Female, age 85, both hemispheres 23.7
2821 Male, age 75, both hemispheres 23.2
Nucleus of the diagonal band
nTPM: 26.2
2029 Male, age 61, right hemisphere 29.1
2775 Male, age 80, right hemisphere 26.8
1812 Female, age 91, both hemispheres 25.6
1979 Male, age 74, unknown 25.4
2195 Female, age 85, both hemispheres 24.1
Olfactory tubercle
nTPM: 26.9
2856 Male, age 75, right hemisphere 31.3
1846 Male, age 80, right hemisphere 28.4
2487 Female, age 94, left hemisphere 24.4
1998 Female, age 91, both hemispheres 23.4
Putamen
nTPM: 31.5
2490 Male, age 61, left hemisphere 48.2
2488 Female, age 85, left hemisphere 38.4
2647 Male, age 75, left hemisphere 34.1
2489 Female, age 72, unknown 31.1
2482 Female, age 94, left hemisphere 29.3
1829 Male, age 74, unknown 27.8
1838 Male, age 80, right hemisphere 25.5
2466 Female, age 79, unknown 25.4
1937 Female, age 91, right hemisphere 23.3
Septal nuclei
nTPM: 27.7
2199 Male, age 80, right hemisphere 32.3
2059 Female, age 85, both hemispheres 31.4
2394 Male, age 61, left hemisphere 29.5
2629 Female, age 94, right hemisphere 26.0
1960 Male, age 74, unknown 25.5
2031 Female, age 72, unknown 25.3
2009 Female, age 91, both hemispheres 24.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 65.9
Min nTPM: 9.0
Std nTPM: 11.1
Median nTPM: 30.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 65.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 61.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 61.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 61.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 60.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 59.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 58.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 58.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 55.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 108.9
Min nTPM: 12.5
Std nTPM: 12.4
Median nTPM: 29.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 108.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 95.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 73.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 72.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 69.9
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 63.6
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 62.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 61.7
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 59.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 57.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 56.3
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Brain - Putamen (basal ganglia)
Average nTPM: 34.3
Samples: 205

Max nTPM: 103.6
Min nTPM: 10.5
Std nTPM: 13.7
Median nTPM: 32.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 103.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 77.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 73.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 71.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 68.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 67.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 66.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 64.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 62.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 61.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 60.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.0
FF:10164-103B2 76 years, female 51.0
Nucleus accumbens
Scaled Tags Per Million: 33.6
FF:10037-101F1 23-56 years, mixed 33.6
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 11.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 12.5
Sample C Male 13.4
Sample D Male 10.1
Putamen
nTPM: 12.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.2
Sample A Female 12.0
Sample B Female 11.2
Sample C Male 14.8
Sample D Male 11.4
Septum
nTPM: 10.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 10.5
Sample C Male 12.1
Sample D Male 10.6
Ventral pallidum
nTPM: 12.1
Samples: 4

Max nTPM: 16.2
Min nTPM: 8.0
Sample A Female 9.2
Sample B Female 15.0
Sample C Male 16.2
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.5
Samples: 4

Max nTPM: 20.9
Min nTPM: 19.9
Sample A Male 20.9
Sample B Male 19.9
Sample C Female 20.8
Sample D Female 20.5
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.4
Sample A Male 15.6
Sample B Male 18.1
Sample C Female 14.4
Sample D Female 16.2
Ventral forebrain
nTPM: 22.5
Samples: 4

Max nTPM: 25.0
Min nTPM: 20.4
Sample A Male 25.0
Sample B Male 20.4
Sample C Female 21.1
Sample D Female 23.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.2
71325450 Antisense, RP_050825_02_H07, Mouse strain C57BL/6J (56 days, male) 10.2
Pallidum
Expression energy: 8.3
71325450 Antisense, RP_050825_02_H07, Mouse strain C57BL/6J (56 days, male) 8.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.