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PPIL2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:15.3 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:43.1 nTPM
Allen mouse:2.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035344
Glial cells Not detected
Neuronal cells Medium

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
2301 Female, age 72, unknown 3.8
2481 Female, age 94, left hemisphere 3.2
2713 Male, age 75, left hemisphere 3.2
2306 Female, age 91, right hemisphere 3.0
2846 Female, age 79, unknown 2.8
1781 Male, age 74, unknown 2.1
1857 Female, age 85, left hemisphere 1.9
1854 Male, age 80, left hemisphere 1.4
2302 Male, age 61, right hemisphere 0.9
Claustrum
nTPM: 3.2
2491 Male, age 75, both hemispheres 4.8
2392 Female, age 94, both hemispheres 4.0
2568 Male, age 61, both hemispheres 3.8
1956 Male, age 74, unknown 3.4
2196 Female, age 79, unknown 3.1
2645 Female, age 72, unknown 3.0
2198 Male, age 80, both hemispheres 2.8
2307 Female, age 91, both hemispheres 2.0
2299 Female, age 85, both hemispheres 1.5
Globus pallidus, externus
nTPM: 1.5
2114 Female, age 85, right hemisphere 2.4
2772 Female, age 79, unknown 2.4
1996 Male, age 80, right hemisphere 2.1
2011 Female, age 91, left hemisphere 1.4
2395 Male, age 75, both hemispheres 1.4
2644 Female, age 94, right hemisphere 1.3
2646 Male, age 61, right hemisphere 1.2
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 2.4
2714 Male, age 75, right hemisphere 4.3
1997 Male, age 61, left hemisphere 2.9
2111 Female, age 85, right hemisphere 2.8
2566 Female, age 72, unknown 2.7
1818 Male, age 74, unknown 2.4
2037 Male, age 80, right hemisphere 1.6
2778 Female, age 91, both hemispheres 1.4
2483 Female, age 94, right hemisphere 1.1
Nucleus accumbens
nTPM: 2.3
2698 Female, age 72, unknown 4.3
1783 Male, age 74, unknown 3.0
1856 Female, age 91, right hemisphere 2.5
1806 Female, age 85, left hemisphere 2.3
2824 Male, age 61, right hemisphere 2.0
2305 Male, age 75, left hemisphere 1.9
2732 Male, age 80, right hemisphere 1.2
2391 Female, age 94, left hemisphere 0.9
Nucleus basalis of Meynert
nTPM: 2.0
2842 Male, age 74, unknown 2.7
2200 Female, age 91, left hemisphere 2.4
2393 Male, age 80, right hemisphere 2.3
2300 Female, age 85, both hemispheres 2.1
2821 Male, age 75, both hemispheres 2.1
2484 Female, age 94, left hemisphere 1.7
2569 Male, age 61, both hemispheres 0.4
Nucleus of the diagonal band
nTPM: 5.3
2029 Male, age 61, right hemisphere 7.3
2195 Female, age 85, both hemispheres 5.9
2775 Male, age 80, right hemisphere 4.9
1812 Female, age 91, both hemispheres 4.5
1979 Male, age 74, unknown 3.7
Olfactory tubercle
nTPM: 5.6
2487 Female, age 94, left hemisphere 6.6
1846 Male, age 80, right hemisphere 6.1
1998 Female, age 91, both hemispheres 5.2
2856 Male, age 75, right hemisphere 4.7
Putamen
nTPM: 1.8
1838 Male, age 80, right hemisphere 2.7
2466 Female, age 79, unknown 2.3
2488 Female, age 85, left hemisphere 2.2
1829 Male, age 74, unknown 2.0
2489 Female, age 72, unknown 1.9
2647 Male, age 75, left hemisphere 1.6
1937 Female, age 91, right hemisphere 1.3
2482 Female, age 94, left hemisphere 1.1
2490 Male, age 61, left hemisphere 1.1
Septal nuclei
nTPM: 3.7
2629 Female, age 94, right hemisphere 6.3
2059 Female, age 85, both hemispheres 4.6
1960 Male, age 74, unknown 4.0
2009 Female, age 91, both hemispheres 3.9
2031 Female, age 72, unknown 3.4
2199 Male, age 80, right hemisphere 1.9
2394 Male, age 61, left hemisphere 1.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.9
Samples: 246

Max nTPM: 24.6
Min nTPM: 6.3
Std nTPM: 2.9
Median nTPM: 14.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 24.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 24.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 23.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 21.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 21.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 21.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 20.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 20.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 19.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 19.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.0
Samples: 246

Max nTPM: 28.5
Min nTPM: 5.9
Std nTPM: 3.8
Median nTPM: 14.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 28.5
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 28.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 26.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 23.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 23.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 22.9
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 22.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 22.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 22.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 22.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 21.8
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Brain - Putamen (basal ganglia)
Average nTPM: 15.3
Samples: 205

Max nTPM: 24.8
Min nTPM: 7.8
Std nTPM: 3.0
Median nTPM: 15.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 24.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 23.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 23.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 23.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 22.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 22.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 22.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 20.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 20.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 20.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 20.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.6
FF:10164-103B2 76 years, female 51.6
Nucleus accumbens
Scaled Tags Per Million: 70.8
FF:10037-101F1 23-56 years, mixed 70.8
Putamen
Scaled Tags Per Million: 51.2
FF:10176-103C5 60 years, female 51.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Caudate
nTPM: 25.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.6
Sample A Female 25.3
Sample B Female 27.4
Sample C Male 25.6
Sample D Male 22.6
Putamen
nTPM: 25.8
Samples: 4

Max nTPM: 29.5
Min nTPM: 22.0
Sample A Female 29.5
Sample B Female 22.0
Sample C Male 23.7
Sample D Male 27.9
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.3
Sample A Female 28.9
Sample B Female 26.4
Sample C Male 27.0
Sample D Male 25.3
Ventral pallidum
nTPM: 27.1
Samples: 4

Max nTPM: 30.1
Min nTPM: 23.1
Sample A Female 23.1
Sample B Female 26.3
Sample C Male 30.1
Sample D Male 29.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.1
Samples: 4

Max nTPM: 46.4
Min nTPM: 41.3
Sample A Male 42.9
Sample B Male 41.3
Sample C Female 46.4
Sample D Female 41.8
Septum
nTPM: 37.0
Samples: 4

Max nTPM: 38.8
Min nTPM: 34.9
Sample A Male 36.6
Sample B Male 38.8
Sample C Female 37.5
Sample D Female 34.9
Ventral forebrain
nTPM: 42.3
Samples: 4

Max nTPM: 49.4
Min nTPM: 35.6
Sample A Male 39.7
Sample B Male 44.4
Sample C Female 35.6
Sample D Female 49.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
69549249 Antisense, RP_050125_01_G02, Mouse strain C57BL/6J (56 days, male) 2.6
Pallidum
Expression energy: 2.5
69549249 Antisense, RP_050125_01_G02, Mouse strain C57BL/6J (56 days, male) 2.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.