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SLC25A1
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  • SLC25A1
TISSUE HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:33.2 nTPM
HPA Brain:33.6 nTPM
GTEx:33.2 nTPM
FANTOM5:31.2 Scaled Tags Per Million
Pig:33.2 nTPM
Mouse:29.7 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Hippocampus
nTPM: 32.3
1898 Male, age 80, left hemisphere 36.2
2529 Female, age 94, left hemisphere 35.7
2148 Female, age 91, left hemisphere 33.0
1911 Female, age 85, right hemisphere 31.9
1855 Male, age 76, left hemisphere 29.8
2621 Female, age 67, right hemisphere 27.3
Dentate gyrus
nTPM: 32.9
2528 Male, age 74, both hemispheres 38.9
2530 Female, age 94, left hemisphere 36.8
2010 Male, age 76, both hemispheres 35.2
2246 Female, age 85, both hemispheres 34.9
2531 Female, age 67, both hemispheres 28.4
1927 Female, age 91, both hemispheres 23.3
Entorhinal gyrus
nTPM: 33.6
2117 Female, age 91, right hemisphere 46.9
1787 Male, age 76, left hemisphere 32.9
2764 Male, age 80, right hemisphere 31.5
1938 Female, age 85, left hemisphere 31.3
2686 Male, age 75, right hemisphere 31.0
2613 Female, age 94, left hemisphere 28.0
Hippocampus, CA1
nTPM: 31.6
2082 Female, age 91, right hemisphere 35.0
2527 Male, age 74, both hemispheres 34.3
2749 Male, age 80, left hemisphere 31.6
1873 Female, age 85, both hemispheres 31.0
2045 Male, age 76, both hemispheres 26.4
Hippocampus, CA2
nTPM: 32.3
2249 Male, age 74, both hemispheres 38.9
1963 Male, age 80, left hemisphere 37.0
2437 Female, age 94, left hemisphere 33.5
2113 Female, age 91, right hemisphere 33.3
1940 Female, age 85, left hemisphere 27.1
1892 Male, age 76, both hemispheres 24.0
Hippocampus, CA3
nTPM: 31.9
2436 Male, age 74, both hemispheres 41.1
2861 Female, age 67, both hemispheres 33.8
1891 Female, age 85, both hemispheres 32.1
2620 Female, age 94, left hemisphere 29.8
1867 Male, age 76, both hemispheres 29.1
2137 Male, age 80, left hemisphere 25.4
Parahippocampal cortex
nTPM: 30.6
2692 Male, age 74, both hemispheres 34.7
2250 Female, age 67, right hemisphere 34.6
2245 Female, age 91, both hemispheres 31.8
1990 Female, age 91, right hemisphere 30.9
1933 Female, age 85, both hemispheres 30.7
2622 Female, age 67, right hemisphere 30.6
2532 Female, age 72, left hemisphere 28.8
2018 Male, age 76, both hemispheres 28.5
1850 Male, age 80, both hemispheres 28.3
2693 Female, age 94, both hemispheres 26.9
Perirhinal gyrus
nTPM: 26.8
1847 Female, age 91, left hemisphere 30.6
1794 Male, age 80, right hemisphere 28.4
2521 Female, age 94, right hemisphere 27.1
1841 Female, age 85, right hemisphere 25.8
2848 Male, age 76, right hemisphere 22.3
Subiculum
nTPM: 33.0
2729 Female, age 91, right hemisphere 36.1
2619 Male, age 74, both hemispheres 35.7
2042 Male, age 76, both hemispheres 35.0
1977 Female, age 85, both hemispheres 34.9
1901 Male, age 80, both hemispheres 30.7
2438 Female, age 94, left hemisphere 25.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.2
Samples: 197

Max nTPM: 86.1
Min nTPM: 16.7
Std nTPM: 8.9
Median nTPM: 31.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 86.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 58.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 57.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 55.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 52.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 51.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 49.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 49.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 48.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 48.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 47.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 47.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 46.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 46.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 46.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 45.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 45.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 44.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 43.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 43.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 42.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 42.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 42.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 41.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 41.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 41.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 40.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 40.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 40.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 39.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 39.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 39.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 39.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 39.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 39.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 39.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 39.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 38.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 38.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 38.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 38.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 38.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 38.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 38.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 37.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 37.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 37.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 37.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 37.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 37.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 37.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 37.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 37.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 37.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 37.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 36.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 36.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 36.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 36.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 36.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 36.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 36.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 36.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 36.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 36.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 35.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 35.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 35.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 35.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 35.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 35.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 34.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 34.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 34.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 34.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 34.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 34.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 33.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 33.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 33.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 33.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 33.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 33.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 33.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 33.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 33.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 32.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 32.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 32.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 32.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 32.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 32.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 31.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 31.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 31.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 31.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 31.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 31.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 31.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 31.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 31.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 31.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 31.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 31.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 31.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 31.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 31.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 30.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 30.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 30.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 30.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 30.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 30.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 30.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 30.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 30.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 30.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 30.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 29.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 29.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 29.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 29.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 29.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 29.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 29.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 29.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 29.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 28.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 28.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 28.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 28.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 27.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 27.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 27.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 27.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 27.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 27.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 27.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 27.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 27.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 27.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 27.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 27.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 27.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 26.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 26.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 26.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 26.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 26.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 26.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 26.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 26.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 26.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 26.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 25.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 25.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 25.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 25.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 25.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 25.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 25.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 25.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 25.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 25.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 24.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 24.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 24.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 23.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 23.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 23.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 23.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 22.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 22.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 22.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 22.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 21.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 21.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 21.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 21.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 21.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 20.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 20.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 20.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 20.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 19.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 19.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 18.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 18.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 18.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 16.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.2
FF:10153-102I9 76 years, female 38.7
FF:10169-103B7 60 years, female 23.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 33.2
Pig sample Sample description nTPM
Subiculum
nTPM: 31.2
Samples: 4

Max nTPM: 37.2
Min nTPM: 28.4
Sample A Female 37.2
Sample B Female 28.7
Sample C Male 30.6
Sample D Male 28.4
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 38.1
Min nTPM: 23.4
Sample A Female 38.1
Sample B Female 26.3
Sample C Male 34.4
Sample D Male 23.4
Entorhinal cortex
nTPM: 27.2
Samples: 4

Max nTPM: 31.4
Min nTPM: 22.3
Sample A Female 26.3
Sample B Female 28.7
Sample C Male 31.4
Sample D Male 22.3
Ventral hippocampus
nTPM: 33.2
Samples: 4

Max nTPM: 45.5
Min nTPM: 25.0
Sample A Female 33.4
Sample B Female 25.0
Sample C Male 45.5
Sample D Male 29.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 29.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.6
Samples: 4

Max nTPM: 29.8
Min nTPM: 24.5
Sample A Male 24.7
Sample B Male 24.5
Sample C Female 27.5
Sample D Female 29.8
Hippocampal formation
nTPM: 29.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 26.7
Sample A Male 30.0
Sample B Male 26.7
Sample C Female 27.5
Sample D Female 34.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
77454675 Antisense, RP_070129_01_C07, Mouse strain C57BL/6J (56 days, male) 1.2
2587 Antisense, RP_040507_01_F10, Mouse strain C57BL/6J (56 days, male) 0.9

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