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ABCC5
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  • ABCC5
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:29.9 nTPM
HPA Brain:66.0 nTPM
GTEx:29.9 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:25.5 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052295
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.0
Sample id Sample description nTPM
Hippocampus
nTPM: 51.1
2148 Female, age 91, left hemisphere 57.3
2621 Female, age 67, right hemisphere 57.2
2529 Female, age 94, left hemisphere 53.9
1898 Male, age 80, left hemisphere 47.3
1855 Male, age 76, left hemisphere 46.2
1911 Female, age 85, right hemisphere 44.9
Dentate gyrus
nTPM: 53.8
2531 Female, age 67, both hemispheres 74.0
1927 Female, age 91, both hemispheres 57.8
2246 Female, age 85, both hemispheres 50.2
2528 Male, age 74, both hemispheres 50.0
2010 Male, age 76, both hemispheres 45.7
2530 Female, age 94, left hemisphere 45.2
Entorhinal gyrus
nTPM: 55.5
2613 Female, age 94, left hemisphere 66.8
2686 Male, age 75, right hemisphere 58.7
2764 Male, age 80, right hemisphere 58.3
1787 Male, age 76, left hemisphere 52.0
1938 Female, age 85, left hemisphere 49.7
2117 Female, age 91, right hemisphere 47.6
Hippocampus, CA1
nTPM: 54.9
2749 Male, age 80, left hemisphere 67.4
2082 Female, age 91, right hemisphere 55.7
2045 Male, age 76, both hemispheres 54.1
1873 Female, age 85, both hemispheres 49.7
2527 Male, age 74, both hemispheres 47.4
Hippocampus, CA2
nTPM: 52.8
1963 Male, age 80, left hemisphere 58.4
1892 Male, age 76, both hemispheres 56.8
2249 Male, age 74, both hemispheres 53.3
2437 Female, age 94, left hemisphere 50.6
2113 Female, age 91, right hemisphere 49.8
1940 Female, age 85, left hemisphere 47.7
Hippocampus, CA3
nTPM: 66.0
2436 Male, age 74, both hemispheres 99.2
2620 Female, age 94, left hemisphere 67.8
2861 Female, age 67, both hemispheres 64.9
2137 Male, age 80, left hemisphere 63.5
1867 Male, age 76, both hemispheres 53.1
1891 Female, age 85, both hemispheres 47.3
Parahippocampal cortex
nTPM: 55.8
2622 Female, age 67, right hemisphere 65.3
2693 Female, age 94, both hemispheres 64.7
2532 Female, age 72, left hemisphere 57.7
1850 Male, age 80, both hemispheres 56.4
2250 Female, age 67, right hemisphere 55.6
1933 Female, age 85, both hemispheres 54.3
1990 Female, age 91, right hemisphere 53.7
2245 Female, age 91, both hemispheres 53.6
2018 Male, age 76, both hemispheres 51.5
2692 Male, age 74, both hemispheres 45.1
Perirhinal gyrus
nTPM: 58.6
2848 Male, age 76, right hemisphere 62.5
2521 Female, age 94, right hemisphere 60.4
1841 Female, age 85, right hemisphere 59.6
1847 Female, age 91, left hemisphere 56.2
1794 Male, age 80, right hemisphere 54.4
Subiculum
nTPM: 47.0
2729 Female, age 91, right hemisphere 52.2
1901 Male, age 80, both hemispheres 50.1
1977 Female, age 85, both hemispheres 48.7
2438 Female, age 94, left hemisphere 47.5
2619 Male, age 74, both hemispheres 44.4
2042 Male, age 76, both hemispheres 39.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.9
Samples: 197

Max nTPM: 60.8
Min nTPM: 7.1
Std nTPM: 8.7
Median nTPM: 30.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 60.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 60.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 58.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 52.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 52.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 50.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 45.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 45.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 44.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 44.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 43.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 43.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 42.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 41.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 41.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 40.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 40.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 39.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 39.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 39.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 39.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 39.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 39.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 39.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 38.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 38.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 38.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 38.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 37.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 37.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 37.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 37.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 37.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 36.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 36.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 36.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 36.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 36.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 36.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 36.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 36.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 35.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 35.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 35.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 35.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 35.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 35.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 35.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 35.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 35.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 35.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 34.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 34.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 34.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 34.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 34.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 34.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 34.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 34.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 33.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 33.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 33.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 33.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 33.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 33.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 33.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 32.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 32.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 32.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 32.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 32.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 32.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 32.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 32.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 32.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 32.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 32.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 32.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 32.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 31.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 31.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 31.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 31.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 31.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 31.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 31.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 31.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 31.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 31.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 31.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 30.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 30.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 30.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 30.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 30.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 30.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 30.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 30.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 30.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 29.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 29.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 29.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 29.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 29.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 29.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 29.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 29.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 28.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 28.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 28.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 28.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 28.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 28.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 28.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 28.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 28.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 27.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 27.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 27.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 26.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 26.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 26.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 26.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 26.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 26.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 26.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 26.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 25.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 25.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 25.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 25.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 25.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 25.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 25.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 24.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 24.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 24.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 24.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 24.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 24.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 24.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 24.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 24.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 24.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 24.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 23.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 23.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 23.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 23.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 23.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 23.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 23.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 23.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 22.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 22.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 22.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 22.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 22.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 22.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 22.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 21.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 21.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 21.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 21.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 21.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 21.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 21.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 21.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 20.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 20.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 20.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 20.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 20.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 20.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 20.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 20.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 19.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 19.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 19.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 18.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 18.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 18.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 17.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 17.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 17.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 17.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 14.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 14.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 14.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 13.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 12.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 9.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 8.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 7.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.1
FF:10153-102I9 76 years, female 57.5
FF:10169-103B7 60 years, female 46.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 23.3
Pig sample Sample description nTPM
Subiculum
nTPM: 18.1
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.1
Sample A Female 17.1
Sample B Female 17.4
Sample C Male 19.5
Sample D Male 18.4
Dorsal hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 15.9
Sample C Male 14.7
Sample D Male 19.4
Entorhinal cortex
nTPM: 23.3
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.5
Sample A Female 22.6
Sample B Female 23.5
Sample C Male 20.5
Sample D Male 26.7
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 16.9
Sample C Male 19.6
Sample D Male 17.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.5
Samples: 4

Max nTPM: 29.7
Min nTPM: 23.3
Sample A Male 24.1
Sample B Male 29.7
Sample C Female 23.3
Sample D Female 24.8
Hippocampal formation
nTPM: 25.3
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.6
Sample A Male 25.7
Sample B Male 27.7
Sample C Female 23.6
Sample D Female 24.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
69236628 Antisense, RP_050329_04_A11, Mouse strain C57BL/6J (56 days, male) 2.6
70795454 Antisense, RP_050712_01_F03, Mouse strain C57BL/6J (56 days, male) 0.7

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