DGUOK

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:15.4 FPKM
GTEx:18.5 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA034766

 

Antibody HPA057246

 

Endothelial cells

High   Low  

Glandular cells

High   Low  

Peripheral nerve/ganglion

Medium   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

15.4

overview Male, age 54
Sample 1
FPKM: 14.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 15.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 14.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 10.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 11.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 17.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 24.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

18.5

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 17.2
Samples: 149

Max RPKM: 35
Min RPKM: 11.7
Std RPKM: 3.2
Median RPKM: 16.6
GTEX-13O1R-2426-SM-5KLZZ 35.0
GTEX-1399U-2226-SM-5KLZI 28.7
GTEX-11WQK-2526-SM-5CVL8 26.2
GTEX-11TT1-0926-SM-5GU5M 24.6
GTEX-11TUW-2326-SM-5EQMO 24.4
GTEX-148VJ-2426-SM-5NQ9Y 23.5
GTEX-1339X-1726-SM-5P9J9 22.9
GTEX-WI4N-2226-SM-4OOS9 22.8
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 19.8
Samples: 196

Max RPKM: 32.6
Min RPKM: 10.4
Std RPKM: 3.6
Median RPKM: 19.7
GTEX-T5JW-1126-SM-4DM5V 32.6
GTEX-1399R-2226-SM-5P9JB 30.7
GTEX-ZYVF-2826-SM-5GIDK 28.3
GTEX-1128S-1626-SM-5H12O 27.1
GTEX-Y3IK-1826-SM-4WWDS 26.9
GTEX-11WQK-2126-SM-5EQME 26.8
GTEX-QCQG-1626-SM-48U26 26.8
GTEX-XV7Q-2126-SM-4BRVX 26.6
Show all