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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
77.5
nTPM
HPA Brain:
77.0
nTPM
GTEx:
77.5
nTPM
FANTOM5:
28.2
Scaled Tags Per Million
Pig:
0.7
nTPM
Mouse:
188.3
nTPM
Allen mouse:
5.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
77.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 66.7
2666
Male, age 74, left hemisphere
77.6
2019
Male, age 18, unknown
75.9
1827
Male, age 72, unknown
74.4
1870
Female, age 42, unknown
67.1
2411
Female, age 72, unknown
66.3
2219
Male, age 76, both hemispheres
65.8
1833
Male, age 53, unknown
63.8
1830
Male, age 51, unknown
62.1
2828
Female, age 72, unknown
57.7
2586
Male, age 75, left hemisphere
56.4
Dorsal raphe nucleus nTPM: 64.6
1828
Male, age 53, unknown
70.6
2298
Female, age 72, unknown
69.4
2016
Female, age 72, unknown
62.7
2047
Male, age 72, unknown
62.5
2750
Male, age 76, both hemispheres
57.8
Inferior colliculus nTPM: 69.9
2097
Female, age 72, unknown
75.6
1848
Female, age 42, unknown
69.5
1890
Male, age 53, unknown
67.6
2849
Male, age 72, unknown
67.0
Median raphe nucleus nTPM: 68.6
2220
Male, age 76, midline
68.6
Periaquaductal grey, anterior nTPM: 72.9
1947
Male, age 18, unknown
79.0
2502
Female, age 75, unknown
71.3
1795
Male, age 51, unknown
68.4
Periaquaductal grey, dorsal nTPM: 67.3
2850
Male, age 76, both hemispheres
73.4
1840
Male, age 53, unknown
69.1
1831
Male, age 72, unknown
67.8
2464
Female, age 72, unknown
59.1
Periaquaductal grey, lateral nTPM: 68.0
2272
Male, age 74, both hemispheres
75.1
2053
Male, age 18, unknown
67.7
2140
Male, age 76, both hemispheres
61.2
Pretectal area nTPM: 77.0
1944
Female, age 72, unknown
92.8
1816
Male, age 51, unknown
92.7
1817
Female, age 42, unknown
92.2
2007
Male, age 72, unknown
87.7
1815
Male, age 53, unknown
84.3
2273
Male, age 74, both hemispheres
73.2
2224
Female, age 72, unknown
70.6
2667
Female, age 75, unknown
68.3
2825
Male, age 18, unknown
64.0
2407
Male, age 75, both hemispheres
61.6
2316
Male, age 76, right hemisphere
59.6
Red nucleus nTPM: 63.2
2725
Female, age 75, unknown
75.3
1821
Female, age 72, unknown
73.2
2588
Male, age 74, left hemisphere
70.9
1954
Female, age 42, unknown
65.8
2584
Male, age 75, left hemisphere
64.0
2503
Female, age 72, unknown
63.9
2785
Male, age 18, unknown
62.9
1865
Male, age 51, unknown
60.8
2823
Male, age 76, right hemisphere
59.6
1904
Male, age 53, unknown
56.2
2769
Male, age 72, unknown
55.2
2227
Male, age 72, unknown
51.0
Substantia nigra nTPM: 74.1
2241
Male, age 72, unknown
89.9
1889
Female, age 72, unknown
89.7
1941
Male, age 53, unknown
80.5
1916
Female, age 42, unknown
79.3
2409
Female, age 72, unknown
77.3
1851
Male, age 51, unknown
71.8
2590
Female, age 75, unknown
69.2
2665
Male, age 74, both hemispheres
62.5
2699
Male, age 18, unknown
61.5
2583
Male, age 75, right hemisphere
59.6
Superior colliculus nTPM: 67.0
2261
Male, age 18, unknown
76.1
2087
Female, age 72, unknown
75.0
2587
Male, age 74, left hemisphere
72.6
1839
Male, age 51, unknown
68.8
1895
Male, age 76, right hemisphere
68.2
2668
Female, age 75, unknown
67.0
1913
Female, age 42, unknown
63.8
1995
Male, age 72, unknown
62.8
1796
Male, age 53, unknown
60.9
2664
Male, age 75, both hemispheres
55.4
Ventral tegmental area nTPM: 68.7
2410
Female, age 72, unknown
76.6
2218
Male, age 76, both hemispheres
71.4
1915
Female, age 42, unknown
68.8
2021
Male, age 53, unknown
65.8
1942
Male, age 51, unknown
65.5
2223
Female, age 72, unknown
64.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
77.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 77.5
Samples: 139
Max nTPM: 138.4
Min nTPM: 52.8
Std nTPM: 14.1
Median nTPM: 74.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
138.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
125.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
118.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
110.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
109.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
109.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
107.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
105.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
103.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
102.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
100.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
98.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
96.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
94.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
94.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
94.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
91.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
91.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
90.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
90.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
89.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
89.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
88.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
88.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
87.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
87.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
87.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
87.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
86.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
86.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
86.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
86.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
86.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
85.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
85.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
85.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
84.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
84.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
83.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
83.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
83.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
82.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
82.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
82.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
81.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
80.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
80.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
80.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
80.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
80.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
79.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
79.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
78.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
77.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
77.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
77.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
77.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
76.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
76.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
76.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
76.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
75.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
75.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
75.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
75.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
75.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
75.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
74.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
74.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
74.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
74.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
73.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
73.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
73.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
73.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
73.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
72.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
72.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
72.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
72.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
72.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
72.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
71.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
71.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
71.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
71.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
71.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
71.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
71.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
70.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
70.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
70.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
69.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
69.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
69.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
69.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
68.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
68.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
68.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
68.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
68.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
68.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
68.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
67.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
67.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
67.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
67.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
66.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
66.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
66.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
66.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
65.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
65.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
65.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
65.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
65.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
65.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
65.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
65.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
64.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
64.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
64.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
64.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
63.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
62.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
62.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
61.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
60.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
60.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
59.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
59.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
57.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
57.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
56.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
56.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
54.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
52.8
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
188.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 188.3
Samples: 4
Max nTPM: 191.2
Min nTPM: 185.2
Sample A
Male
187.2
Sample B
Male
185.2
Sample C
Female
191.2
Sample D
Female
189.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.