AGMAT

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:10.3 FPKM
GTEx:2.1 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA026443

 

Antibody HPA028321

 

Endothelial cells

Not detected   Not detected  

Glandular cells

High   Not detected  

Peripheral nerve/ganglion

Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

10.3

overview Male, age 54
Sample 1
FPKM: 6.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 7.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 12.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 13.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 7.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 8.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 16.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

2.1

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 0.1
Samples: 149

Max RPKM: 1.1
Min RPKM: 0
Std RPKM: 0.1
Median RPKM: 0
GTEX-YJ8A-1726-SM-5P9IQ 1.1
GTEX-WQUQ-2626-SM-4MVNP 1.1
GTEX-XBED-1726-SM-47JYO 0.9
GTEX-Y5LM-1426-SM-5RQJL 0.7
GTEX-YEC3-2026-SM-4WWFL 0.6
GTEX-V955-1726-SM-4JBHF 0.6
GTEX-11EQ9-1526-SM-5PNY7 0.3
GTEX-146FH-2426-SM-5Q5EW 0.3
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.1
Samples: 196

Max RPKM: 11.1
Min RPKM: 0
Std RPKM: 3.2
Median RPKM: 4.5
GTEX-XUJ4-2026-SM-4BOOW 11.1
GTEX-U4B1-1126-SM-4DXV3 10.6
GTEX-146FQ-1926-SM-5NQBY 10.5
GTEX-11P82-1026-SM-5BC5J 10.5
GTEX-T5JW-1126-SM-4DM5V 10.1
GTEX-YF7O-1726-SM-5IFJ9 9.9
GTEX-11TT1-1026-SM-5PNW7 9.7
GTEX-R55D-1826-SM-48FEF 9.6
Show all