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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 5129.6
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 1865.2
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 1670.3
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 5164.8
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 5372.3
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 4694.6
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 3916.2
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 7255.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 5876.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 7893.9
Min RPKM: 346.2
Std RPKM: 1568.2
Median RPKM: 4297.2
GTEX-117YW-1526-SM-5EGGP
7893.9
GTEX-11OF3-1826-SM-5987N
7875.0
GTEX-11ZUS-2726-SM-5FQUA
7820.7
GTEX-12WSL-2326-SM-5DUXQ
7586.7
GTEX-ZQUD-2026-SM-51MSM
7546.1
GTEX-13FHP-2826-SM-5IJFW
6823.4
GTEX-WOFM-1126-SM-4OOSB
6798.0
GTEX-11WQC-2326-SM-5EQKE
6772.5
GTEX-N7MS-0126-SM-3TW8O
6719.5
GTEX-QEG5-0126-SM-4R1JR
6691.3
GTEX-S95S-1126-SM-4B64E
6641.0
GTEX-XAJ8-1326-SM-47JYT
6585.1
GTEX-12WSH-0326-SM-5GCNH
6402.1
GTEX-QEG4-0126-SM-48TZE
6355.3
GTEX-11NUK-2626-SM-5A5MB
6237.5
GTEX-1339X-1926-SM-5PNVP
6211.0
GTEX-ZA64-1626-SM-5CVME
6172.1
GTEX-14ABY-0626-SM-5Q5C9
6170.1
GTEX-11EQ9-1926-SM-5PNVV
6094.8
GTEX-ZAB5-2426-SM-5CVMW
6090.6
GTEX-13112-0226-SM-5P9IV
6087.0
GTEX-12ZZY-0126-SM-5LZV2
6018.2
GTEX-T6MN-2026-SM-4DM7L
6007.9
GTEX-13OW5-2526-SM-5L3I1
5984.3
GTEX-S7PM-0626-SM-4AD4Q
5954.0
GTEX-11EQ8-1426-SM-5EGJR
5920.7
GTEX-111FC-1926-SM-5GZYC
5917.8
GTEX-WZTO-0326-SM-4PQYZ
5916.7
GTEX-11P82-1526-SM-5BC5M
5821.9
GTEX-13111-1526-SM-5EGJX
5636.3
GTEX-139TS-1726-SM-5IJG5
5601.1
GTEX-11NV4-1726-SM-5N9FC
5577.7
GTEX-13OVL-0426-SM-5IFG6
5463.9
GTEX-13O1R-0726-SM-5IJEI
5443.6
GTEX-U8T8-1126-SM-4DXUE
5431.2
GTEX-WK11-0326-SM-4OOS6
5411.0
GTEX-OOBK-2126-SM-3LK5T
5384.8
GTEX-T5JC-0726-SM-4DM55
5363.5
GTEX-111VG-1926-SM-5GIDO
5334.4
GTEX-13O21-1226-SM-5J2MK
5306.2
GTEX-ZYT6-2726-SM-5GICP
5300.2
GTEX-REY6-0126-SM-48FDT
5247.5
GTEX-11TUW-2226-SM-5EQL9
5211.6
GTEX-PW2O-1426-SM-48TCD
5184.6
GTEX-13N2G-0126-SM-5N9DV
5184.0
GTEX-S4Q7-1226-SM-4AD5I
5175.3
GTEX-ZPU1-2126-SM-57WED
5165.2
GTEX-ZVTK-0126-SM-57WDG
5116.3
GTEX-111YS-2026-SM-5EGGL
5094.5
GTEX-OOBJ-2126-SM-3NB1N
5038.1
GTEX-ZYFC-0126-SM-5GIEH
5036.0
GTEX-11TT1-2226-SM-5GU6B
5022.9
GTEX-XQ3S-2726-SM-4BOP2
5022.9
GTEX-Z93S-1726-SM-5HL8G
4894.4
GTEX-Q2AI-1226-SM-48U14
4861.8
GTEX-TKQ2-1526-SM-4DXUN
4859.5
GTEX-YEC3-1726-SM-5IFIK
4850.2
GTEX-111CU-1726-SM-5EGHM
4836.4
GTEX-1212Z-0326-SM-5FQSJ
4835.3
GTEX-11DXZ-2126-SM-59881
4834.3
GTEX-117XS-2026-SM-5GID1
4828.7
GTEX-12C56-1426-SM-5FQSW
4820.9
GTEX-XLM4-1526-SM-4AT6D
4804.9
GTEX-V955-1926-SM-4KL1L
4802.7
GTEX-ZZ64-1126-SM-5GZXY
4794.4
GTEX-11LCK-2326-SM-5HL53
4759.5
GTEX-11WQK-2826-SM-5EQKH
4705.4
GTEX-Y111-2426-SM-4TT23
4702.5
GTEX-P4QS-2126-SM-3NMCF
4681.5
GTEX-ZUA1-2726-SM-59HLJ
4670.7
GTEX-144GL-0726-SM-5LU4P
4670.2
GTEX-12696-0226-SM-5EGL3
4645.4
GTEX-UPJH-0126-SM-4IHLL
4645.2
GTEX-ZTSS-1526-SM-51MTC
4642.0
GTEX-ZDYS-1326-SM-5IJFF
4609.0
GTEX-11NSD-1026-SM-5N9BE
4552.2
GTEX-11GS4-2026-SM-5N9CP
4536.4
GTEX-U8XE-0126-SM-4E3I3
4532.2
GTEX-ZVZP-2226-SM-57WBF
4508.1
GTEX-SUCS-1326-SM-4DM5T
4452.0
GTEX-XBEC-0126-SM-4GIDT
4435.8
GTEX-X3Y1-2626-SM-4PQZI
4406.3
GTEX-TKQ1-0926-SM-4DXU2
4397.3
GTEX-ZT9W-2226-SM-57WFU
4342.1
GTEX-X5EB-2026-SM-4E3KA
4319.2
GTEX-13N1W-2626-SM-5IJEP
4307.1
GTEX-13OVH-0726-SM-5N9BU
4287.4
GTEX-14753-0626-SM-5Q5CY
4271.5
GTEX-T8EM-0126-SM-4DM5R
4245.9
GTEX-RUSQ-2126-SM-47JXK
4239.9
GTEX-R55C-1426-SM-48FED
4202.9
GTEX-RWSA-2426-SM-47JXR
4175.3
GTEX-144GM-0426-SM-5Q5C8
4155.7
GTEX-12WSI-2126-SM-5GCMV
4143.7
GTEX-Y8E4-2226-SM-5LU94
4134.1
GTEX-QMRM-1526-SM-4R1K6
4078.0
GTEX-XGQ4-2026-SM-4AT6G
4068.5
GTEX-S7SE-0326-SM-4AT5Q
4065.9
GTEX-OXRL-2126-SM-3NM98
4048.3
GTEX-QV31-1126-SM-4R1K4
3998.1
GTEX-R55D-0126-SM-48FEL
3994.7
GTEX-131XE-0426-SM-5IJF4
3989.3
GTEX-OIZI-0126-SM-3NB13
3945.6
GTEX-WH7G-1926-SM-4LVMM
3924.8
GTEX-SNOS-1126-SM-4DM67
3882.5
GTEX-Q2AH-1526-SM-48TZG
3831.4
GTEX-13FLW-2126-SM-5N9FD
3823.9
GTEX-11O72-0726-SM-5P9GO
3803.0
GTEX-Y5V6-1726-SM-4VDSZ
3788.1
GTEX-13O61-2026-SM-5J2M6
3726.2
GTEX-13NZA-2526-SM-5IJFX
3691.8
GTEX-145MO-0126-SM-5S2QU
3690.1
GTEX-XPT6-1626-SM-4B655
3644.4
GTEX-144GN-1626-SM-5Q5BU
3582.1
GTEX-U4B1-1526-SM-4DXSL
3563.3
GTEX-OHPM-2126-SM-3LK75
3551.6
GTEX-XMK1-2026-SM-4B65K
3490.3
GTEX-WHSB-2126-SM-4M1XF
3479.0
GTEX-QLQW-1026-SM-447A9
3430.2
GTEX-Y9LG-1726-SM-4VBQE
3428.2
GTEX-13VXU-0726-SM-5J2O7
3419.2
GTEX-13NZB-2026-SM-5MR4M
3419.0
GTEX-XPVG-2226-SM-4B65U
3415.4
GTEX-139T6-1226-SM-5IFFC
3396.4
GTEX-OIZH-2126-SM-3NB1P
3342.7
GTEX-V1D1-2126-SM-4JBH4
3323.8
GTEX-SNMC-1026-SM-4DM7K
3320.1
GTEX-U3ZM-1626-SM-4DXSK
3294.5
GTEX-147JS-0126-SM-5S2TW
3291.7
GTEX-RM2N-1326-SM-48FCW
3242.2
GTEX-132QS-1226-SM-5P9GD
3228.9
GTEX-ZT9X-1426-SM-5DUX1
3212.8
GTEX-R55E-0726-SM-48FCZ
3143.7
GTEX-NFK9-0126-SM-3LK5H
3076.1
GTEX-WVLH-2626-SM-4MVNV
2998.7
GTEX-11P7K-1026-SM-5HL6Y
2984.5
GTEX-XBED-2026-SM-4AT5D
2952.2
GTEX-QV44-1726-SM-4R1KG
2950.7
GTEX-ZV7C-2026-SM-5NQ8F
2830.9
GTEX-YEC4-1526-SM-4W1YU
2815.5
GTEX-11EI6-2226-SM-5EGJM
2759.4
GTEX-145MH-2326-SM-5O9AW
2659.2
GTEX-QLQ7-1426-SM-4R1JX
2602.5
GTEX-YF7O-2026-SM-4W1YE
2570.6
GTEX-WFG8-1926-SM-4LVM1
2500.9
GTEX-11ONC-2226-SM-5HL6D
2393.7
GTEX-13FTW-1326-SM-5LZZD
2340.5
GTEX-12WSM-1326-SM-5GCP9
2314.6
GTEX-139TT-2226-SM-5LZWO
2269.3
GTEX-S3XE-1526-SM-4AD5A
2208.6
GTEX-ZTX8-1126-SM-51MRM
2119.0
GTEX-X261-2326-SM-4PQYU
2060.2
GTEX-YB5E-1926-SM-5IFIG
1993.5
GTEX-PLZ5-1526-SM-3P5ZX
1988.9
GTEX-P4QR-0226-SM-3NMCH
1948.4
GTEX-13NYB-2226-SM-5MR58
1922.4
GTEX-1399R-1626-SM-5P9GG
1836.0
GTEX-WFON-2026-SM-4LVMW
1755.2
GTEX-YJ89-0626-SM-4TT3Z
1686.7
GTEX-U3ZH-1526-SM-4DXV1
1685.5
GTEX-145LT-0426-SM-5LUAP
1680.2
GTEX-S33H-0126-SM-4AD62
1674.9
GTEX-147F4-0626-SM-5LUAK
1609.0
GTEX-13OW6-0126-SM-5IJGM
1603.6
GTEX-ZAB4-0126-SM-5CVMG
1599.8
GTEX-O5YT-2126-SM-3MJGD
1534.6
GTEX-1399Q-2826-SM-5IJEZ
1279.0
GTEX-RN64-2326-SM-48FDW
1164.8
GTEX-VJYA-1426-SM-4KL1Y
943.5
GTEX-YFCO-1726-SM-4W21S
861.9
GTEX-14A6H-2326-SM-5Q5B5
527.7
GTEX-ZDTT-2026-SM-5K7TY
346.2
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.