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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
39.0
nTPM
HPA Brain:
89.0
nTPM
GTEx:
39.0
nTPM
FANTOM5:
5.2
Scaled Tags Per Million
Pig:
38.1
nTPM
Mouse:
82.6
nTPM
Allen mouse:
2.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
89.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 52.4
2586
Male, age 75, left hemisphere
80.9
1827
Male, age 72, unknown
69.4
2828
Female, age 72, unknown
59.5
1833
Male, age 53, unknown
56.3
1870
Female, age 42, unknown
49.9
2411
Female, age 72, unknown
48.1
2219
Male, age 76, both hemispheres
43.8
1830
Male, age 51, unknown
41.5
2019
Male, age 18, unknown
39.7
2666
Male, age 74, left hemisphere
34.8
Dorsal raphe nucleus nTPM: 62.9
2298
Female, age 72, unknown
74.1
2047
Male, age 72, unknown
70.9
2016
Female, age 72, unknown
62.3
1828
Male, age 53, unknown
58.2
2750
Male, age 76, both hemispheres
48.8
Inferior colliculus nTPM: 89.0
1848
Female, age 42, unknown
117.4
2849
Male, age 72, unknown
93.3
2097
Female, age 72, unknown
77.3
1890
Male, age 53, unknown
68.0
Median raphe nucleus nTPM: 31.6
2220
Male, age 76, midline
31.6
Periaquaductal grey, anterior nTPM: 62.0
1947
Male, age 18, unknown
66.8
2502
Female, age 75, unknown
60.8
1795
Male, age 51, unknown
58.6
Periaquaductal grey, dorsal nTPM: 70.6
1840
Male, age 53, unknown
99.1
2464
Female, age 72, unknown
71.0
2850
Male, age 76, both hemispheres
65.5
1831
Male, age 72, unknown
46.9
Periaquaductal grey, lateral nTPM: 67.0
2140
Male, age 76, both hemispheres
87.0
2053
Male, age 18, unknown
76.2
2272
Male, age 74, both hemispheres
37.9
Pretectal area nTPM: 67.4
2667
Female, age 75, unknown
96.2
1817
Female, age 42, unknown
90.4
2316
Male, age 76, right hemisphere
78.8
1816
Male, age 51, unknown
78.7
1944
Female, age 72, unknown
77.0
2224
Female, age 72, unknown
66.9
2825
Male, age 18, unknown
63.5
1815
Male, age 53, unknown
59.5
2007
Male, age 72, unknown
53.5
2273
Male, age 74, both hemispheres
45.0
2407
Male, age 75, both hemispheres
32.4
Red nucleus nTPM: 54.2
1821
Female, age 72, unknown
79.5
1954
Female, age 42, unknown
69.4
2227
Male, age 72, unknown
67.5
2823
Male, age 76, right hemisphere
63.9
2769
Male, age 72, unknown
62.8
1904
Male, age 53, unknown
60.5
2503
Female, age 72, unknown
54.3
1865
Male, age 51, unknown
50.9
2588
Male, age 74, left hemisphere
48.3
2725
Female, age 75, unknown
40.9
2785
Male, age 18, unknown
36.9
2584
Male, age 75, left hemisphere
15.2
Substantia nigra nTPM: 52.8
1889
Female, age 72, unknown
79.2
1916
Female, age 42, unknown
78.0
2699
Male, age 18, unknown
58.1
2409
Female, age 72, unknown
56.9
1851
Male, age 51, unknown
51.6
2241
Male, age 72, unknown
51.4
2665
Male, age 74, both hemispheres
50.8
2590
Female, age 75, unknown
41.1
1941
Male, age 53, unknown
31.8
2583
Male, age 75, right hemisphere
29.4
Superior colliculus nTPM: 60.2
1895
Male, age 76, right hemisphere
96.9
2087
Female, age 72, unknown
74.1
1796
Male, age 53, unknown
68.1
2261
Male, age 18, unknown
67.7
1839
Male, age 51, unknown
66.3
2664
Male, age 75, both hemispheres
64.8
2668
Female, age 75, unknown
59.2
2587
Male, age 74, left hemisphere
37.1
1995
Male, age 72, unknown
35.6
1913
Female, age 42, unknown
32.3
Ventral tegmental area nTPM: 43.1
2410
Female, age 72, unknown
54.0
1915
Female, age 42, unknown
51.7
2218
Male, age 76, both hemispheres
46.1
2021
Male, age 53, unknown
43.0
1942
Male, age 51, unknown
37.2
2223
Female, age 72, unknown
26.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
39.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 39.0
Samples: 139
Max nTPM: 168.8
Min nTPM: 0.7
Std nTPM: 32.6
Median nTPM: 29.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
168.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
168.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
145.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
133.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
128.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
124.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
110.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
110.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
107.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
95.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
95.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
84.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
79.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
77.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
67.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
66.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
65.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
65.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
63.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
63.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
62.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
62.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
61.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
60.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
60.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
59.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
58.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
57.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
57.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
57.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
56.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
56.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
55.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
54.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
53.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
52.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
49.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
49.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
49.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
47.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
46.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
46.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
45.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
43.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
43.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
42.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
41.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
40.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
39.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
39.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
38.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
37.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
37.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
36.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
36.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
35.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
33.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
33.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
33.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
32.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
32.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
30.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
30.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
29.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
28.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
28.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
27.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
27.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
27.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
27.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
26.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
25.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
25.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
25.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
24.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
24.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
23.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
22.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
22.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
22.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
21.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
21.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
21.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
21.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
20.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
20.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
20.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
19.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
19.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
18.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
18.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
17.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
17.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
16.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
16.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
15.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
15.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
14.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
10.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
7.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
6.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
6.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
5.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
3.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
82.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 82.6
Samples: 4
Max nTPM: 88.9
Min nTPM: 69.9
Sample A
Male
83.7
Sample B
Male
69.9
Sample C
Female
87.9
Sample D
Female
88.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.