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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:99.4 nTPM
HPA:99.4 nTPM
GTEx:118.1 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:554.9 nTPM
Allen mouse:23.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 99.4
Sample id Sample description nTPM
Amygdala
nTPM: 59.4
2517 Female, age 94, left hemisphere 72.8
1987 Female, age 91, left hemisphere 67.1
2695 Female, age 67, right hemisphere 54.6
2514 Male, age 75, right hemisphere 52.7
2814 Male, age 76, right hemisphere 49.8
Basal amygdala
nTPM: 75.1
2685 Female, age 94, left hemisphere 92.1
2827 Female, age 67, right hemisphere 81.5
2110 Male, age 80, left hemisphere 75.2
2243 Female, age 91, right hemisphere 71.4
1955 Male, age 76, both hemispheres 65.8
2609 Male, age 75, right hemisphere 64.9
Central amygdala
nTPM: 66.5
2826 Female, age 94, left hemisphere 79.9
2239 Male, age 80, left hemisphere 77.5
2701 Female, age 91, right hemisphere 67.5
2515 Male, age 75, right hemisphere 56.4
1905 Male, age 76, both hemispheres 51.4
Corticomedial amygdala
nTPM: 71.9
2829 Male, age 80, left hemisphere 94.7
2535 Female, age 67, right hemisphere 88.0
2429 Female, age 94, left hemisphere 71.8
2240 Male, age 76, both hemispheres 65.1
2428 Male, age 75, right hemisphere 59.8
2242 Female, age 91, right hemisphere 52.4
Lateral amygdala
nTPM: 70.3
2256 Male, age 80, left hemisphere 91.3
2534 Female, age 94, left hemisphere 91.1
2255 Female, age 91, right hemisphere 73.0
2830 Female, age 67, right hemisphere 58.4
1883 Male, age 76, both hemispheres 55.3
2516 Male, age 75, right hemisphere 52.7
Stria terminalis, bed nucleus
nTPM: 99.4
2486 Female, age 94, both hemispheres 129.3
1974 Female, age 91, both hemispheres 101.8
2201 Male, age 74, unknown 67.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.1
Samples: 152

Max nTPM: 462.8
Min nTPM: 4.3
Std nTPM: 73.5
Median nTPM: 97.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 462.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 353.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 332.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 330.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 324.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 267.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 260.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 254.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 254.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 248.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 244.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 235.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 234.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 224.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 223.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 208.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 195.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 193.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 191.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 179.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 176.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 175.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 175.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 173.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 171.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 169.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 168.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 164.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 163.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 163.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 159.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 158.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 158.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 158.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 157.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 157.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 156.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 156.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 153.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 152.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 151.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 151.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 150.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 144.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 139.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 128.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 125.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 122.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 121.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 119.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 118.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 114.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 112.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 111.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 110.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 107.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 100.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 99.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 99.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 97.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 96.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 95.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 92.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 89.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 89.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 85.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 85.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 85.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 84.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 83.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 82.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 80.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 79.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 79.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 79.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 78.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 77.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 72.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 69.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 69.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 67.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 66.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 65.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 64.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 62.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 62.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 61.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 61.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 57.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 55.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 55.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 53.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 52.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 45.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 42.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 40.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 37.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 30.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 27.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 18.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 12.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 10.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 47.6
FF:10151-102I7 76 years, female 47.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.4
Pig sample Sample description nTPM
Amygdala
nTPM: 54.4
Samples: 4

Max nTPM: 101.4
Min nTPM: 35.2
Sample A Female 101.4
Sample B Female 38.3
Sample C Male 35.2
Sample D Male 42.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 554.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 554.9
Samples: 4

Max nTPM: 805.4
Min nTPM: 417.0
Sample A Male 417.0
Sample B Male 529.3
Sample C Female 805.4
Sample D Female 468.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.2
72129291 Antisense, RP_051017_03_F07, Mouse strain C57BL/6J (56 days, male) 24.8
75750508 Antisense, RP_060518_04_H10, Mouse strain C57BL/6J (56 days, male) 21.5

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