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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 9453.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 6511.1
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 2934.9
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 15445.9
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 12049.2
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 10617.5
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 3648.2
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 6046.2
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 6229.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 24247.6
Min RPKM: 904.8
Std RPKM: 4296.9
Median RPKM: 10134.8
GTEX-13FHP-2826-SM-5IJFW
24247.6
GTEX-11ZUS-2726-SM-5FQUA
23384.2
GTEX-S7PM-0626-SM-4AD4Q
21445.4
GTEX-14ABY-0626-SM-5Q5C9
20840.8
GTEX-11NV4-1726-SM-5N9FC
20721.7
GTEX-117YW-1526-SM-5EGGP
20570.7
GTEX-111VG-1926-SM-5GIDO
19236.9
GTEX-13OW5-2526-SM-5L3I1
18799.1
GTEX-11OF3-1826-SM-5987N
18355.2
GTEX-QEG4-0126-SM-48TZE
17678.3
GTEX-12WSH-0326-SM-5GCNH
17497.3
GTEX-11EQ8-1426-SM-5EGJR
17357.1
GTEX-ZQUD-2026-SM-51MSM
17250.4
GTEX-111FC-1926-SM-5GZYC
16927.6
GTEX-S95S-1126-SM-4B64E
16891.5
GTEX-12WSL-2326-SM-5DUXQ
16851.3
GTEX-N7MS-0126-SM-3TW8O
16131.6
GTEX-13112-0226-SM-5P9IV
15950.7
GTEX-WOFM-1126-SM-4OOSB
15360.0
GTEX-11WQC-2326-SM-5EQKE
15343.1
GTEX-WK11-0326-SM-4OOS6
15326.0
GTEX-139TS-1726-SM-5IJG5
15282.6
GTEX-XAJ8-1326-SM-47JYT
15118.3
GTEX-11NUK-2626-SM-5A5MB
14981.1
GTEX-WZTO-0326-SM-4PQYZ
14782.2
GTEX-1339X-1926-SM-5PNVP
14754.6
GTEX-12WSI-2126-SM-5GCMV
14682.9
GTEX-13O1R-0726-SM-5IJEI
14638.1
GTEX-11EQ9-1926-SM-5PNVV
14431.2
GTEX-13N1W-2626-SM-5IJEP
14222.9
GTEX-T6MN-2026-SM-4DM7L
14219.1
GTEX-13111-1526-SM-5EGJX
14098.9
GTEX-111YS-2026-SM-5EGGL
13995.2
GTEX-13OVL-0426-SM-5IFG6
13983.4
GTEX-Q2AI-1226-SM-48U14
13938.1
GTEX-V955-1926-SM-4KL1L
13727.3
GTEX-ZUA1-2726-SM-59HLJ
13698.3
GTEX-REY6-0126-SM-48FDT
13537.9
GTEX-ZA64-1626-SM-5CVME
13480.7
GTEX-12ZZY-0126-SM-5LZV2
13477.2
GTEX-11TT1-2226-SM-5GU6B
13381.9
GTEX-ZAB5-2426-SM-5CVMW
13128.1
GTEX-WH7G-1926-SM-4LVMM
13077.7
GTEX-XLM4-1526-SM-4AT6D
12991.0
GTEX-144GM-0426-SM-5Q5C8
12963.3
GTEX-OOBK-2126-SM-3LK5T
12858.8
GTEX-111CU-1726-SM-5EGHM
12751.4
GTEX-T5JC-0726-SM-4DM55
12742.3
GTEX-ZZ64-1126-SM-5GZXY
12687.4
GTEX-ZPU1-2126-SM-57WED
12572.9
GTEX-144GL-0726-SM-5LU4P
12495.8
GTEX-QEG5-0126-SM-4R1JR
12451.4
GTEX-XQ3S-2726-SM-4BOP2
12421.8
GTEX-PW2O-1426-SM-48TCD
12395.0
GTEX-Y111-2426-SM-4TT23
12264.9
GTEX-ZYT6-2726-SM-5GICP
12259.8
GTEX-UPJH-0126-SM-4IHLL
12242.6
GTEX-13O21-1226-SM-5J2MK
12144.1
GTEX-11DXZ-2126-SM-59881
12117.3
GTEX-11NSD-1026-SM-5N9BE
12003.0
GTEX-ZTSS-1526-SM-51MTC
11934.1
GTEX-R55D-0126-SM-48FEL
11915.3
GTEX-TKQ2-1526-SM-4DXUN
11695.4
GTEX-Y5V6-1726-SM-4VDSZ
11690.6
GTEX-11TUW-2226-SM-5EQL9
11671.0
GTEX-13NZA-2526-SM-5IJFX
11636.7
GTEX-1212Z-0326-SM-5FQSJ
11627.8
GTEX-ZVTK-0126-SM-57WDG
11513.9
GTEX-XBEC-0126-SM-4GIDT
11465.1
GTEX-YEC3-1726-SM-5IFIK
11441.8
GTEX-11GS4-2026-SM-5N9CP
11413.6
GTEX-Z93S-1726-SM-5HL8G
11275.7
GTEX-TKQ1-0926-SM-4DXU2
10967.0
GTEX-117XS-2026-SM-5GID1
10950.0
GTEX-S4Q7-1226-SM-4AD5I
10854.2
GTEX-13NZB-2026-SM-5MR4M
10680.8
GTEX-ZDYS-1326-SM-5IJFF
10649.8
GTEX-U8XE-0126-SM-4E3I3
10621.9
GTEX-144GN-1626-SM-5Q5BU
10578.2
GTEX-11P82-1526-SM-5BC5M
10391.9
GTEX-OXRL-2126-SM-3NM98
10280.0
GTEX-XGQ4-2026-SM-4AT6G
10271.7
GTEX-12696-0226-SM-5EGL3
10263.2
GTEX-X3Y1-2626-SM-4PQZI
10257.2
GTEX-RUSQ-2126-SM-47JXK
10213.6
GTEX-14753-0626-SM-5Q5CY
10138.2
GTEX-XPT6-1626-SM-4B655
10131.3
GTEX-13VXU-0726-SM-5J2O7
10032.7
GTEX-12C56-1426-SM-5FQSW
10020.8
GTEX-11LCK-2326-SM-5HL53
10000.0
GTEX-S7SE-0326-SM-4AT5Q
9982.8
GTEX-131XE-0426-SM-5IJF4
9941.5
GTEX-Q2AH-1526-SM-48TZG
9926.0
GTEX-13FLW-2126-SM-5N9FD
9899.5
GTEX-U8T8-1126-SM-4DXUE
9869.4
GTEX-X5EB-2026-SM-4E3KA
9847.6
GTEX-SUCS-1326-SM-4DM5T
9818.2
GTEX-WHSB-2126-SM-4M1XF
9778.3
GTEX-13N2G-0126-SM-5N9DV
9524.6
GTEX-R55C-1426-SM-48FED
9513.0
GTEX-OOBJ-2126-SM-3NB1N
9462.5
GTEX-RWSA-2426-SM-47JXR
9450.1
GTEX-11WQK-2826-SM-5EQKH
9201.6
GTEX-11O72-0726-SM-5P9GO
9193.7
GTEX-V1D1-2126-SM-4JBH4
9125.8
GTEX-QLQW-1026-SM-447A9
9077.3
GTEX-ZT9W-2226-SM-57WFU
9061.4
GTEX-X261-2326-SM-4PQYU
9044.6
GTEX-Y8E4-2226-SM-5LU94
8964.8
GTEX-ZVZP-2226-SM-57WBF
8956.7
GTEX-Y9LG-1726-SM-4VBQE
8934.7
GTEX-11EI6-2226-SM-5EGJM
8834.2
GTEX-T8EM-0126-SM-4DM5R
8823.1
GTEX-139T6-1226-SM-5IFFC
8818.4
GTEX-SNOS-1126-SM-4DM67
8756.2
GTEX-QV31-1126-SM-4R1K4
8539.3
GTEX-13O61-2026-SM-5J2M6
8349.5
GTEX-OHPM-2126-SM-3LK75
8182.7
GTEX-U4B1-1526-SM-4DXSL
8133.6
GTEX-QV44-1726-SM-4R1KG
8114.4
GTEX-WVLH-2626-SM-4MVNV
8100.1
GTEX-13OVH-0726-SM-5N9BU
8022.0
GTEX-QMRM-1526-SM-4R1K6
7926.3
GTEX-145MO-0126-SM-5S2QU
7882.2
GTEX-ZYFC-0126-SM-5GIEH
7863.8
GTEX-13FTW-1326-SM-5LZZD
7729.8
GTEX-XMK1-2026-SM-4B65K
7718.9
GTEX-147JS-0126-SM-5S2TW
7685.6
GTEX-NFK9-0126-SM-3LK5H
7627.3
GTEX-OIZI-0126-SM-3NB13
7488.6
GTEX-P4QS-2126-SM-3NMCF
7439.4
GTEX-XPVG-2226-SM-4B65U
7434.0
GTEX-SNMC-1026-SM-4DM7K
7418.0
GTEX-YB5E-1926-SM-5IFIG
7395.7
GTEX-132QS-1226-SM-5P9GD
7031.5
GTEX-13NYB-2226-SM-5MR58
6961.2
GTEX-OIZH-2126-SM-3NB1P
6956.5
GTEX-XBED-2026-SM-4AT5D
6814.1
GTEX-145MH-2326-SM-5O9AW
6757.8
GTEX-YF7O-2026-SM-4W1YE
6630.0
GTEX-ZT9X-1426-SM-5DUX1
6569.8
GTEX-RM2N-1326-SM-48FCW
6348.9
GTEX-ZV7C-2026-SM-5NQ8F
6331.2
GTEX-S3XE-1526-SM-4AD5A
6272.6
GTEX-139TT-2226-SM-5LZWO
6191.8
GTEX-YEC4-1526-SM-4W1YU
6116.6
GTEX-WFG8-1926-SM-4LVM1
6074.6
GTEX-R55E-0726-SM-48FCZ
6054.2
GTEX-11ONC-2226-SM-5HL6D
5945.4
GTEX-11P7K-1026-SM-5HL6Y
5755.2
GTEX-U3ZM-1626-SM-4DXSK
5626.9
GTEX-PLZ5-1526-SM-3P5ZX
5412.8
GTEX-RN64-2326-SM-48FDW
5322.4
GTEX-ZAB4-0126-SM-5CVMG
4973.5
GTEX-QLQ7-1426-SM-4R1JX
4884.6
GTEX-U3ZH-1526-SM-4DXV1
4876.6
GTEX-1399Q-2826-SM-5IJEZ
4770.1
GTEX-1399R-1626-SM-5P9GG
4713.0
GTEX-12WSM-1326-SM-5GCP9
4672.2
GTEX-S33H-0126-SM-4AD62
4651.8
GTEX-WFON-2026-SM-4LVMW
4619.7
GTEX-P4QR-0226-SM-3NMCH
4508.3
GTEX-ZTX8-1126-SM-51MRM
4420.2
GTEX-VJYA-1426-SM-4KL1Y
4187.7
GTEX-145LT-0426-SM-5LUAP
4182.1
GTEX-YJ89-0626-SM-4TT3Z
4137.5
GTEX-13OW6-0126-SM-5IJGM
3887.5
GTEX-147F4-0626-SM-5LUAK
3264.0
GTEX-O5YT-2126-SM-3MJGD
3014.2
GTEX-YFCO-1726-SM-4W21S
2711.9
GTEX-14A6H-2326-SM-5Q5B5
1974.9
GTEX-ZDTT-2026-SM-5K7TY
904.8
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.