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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 134.6
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 203.6
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 117.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 165.4
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 183.7
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 156.0
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 265.3
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 180.5
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 221.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 191.7
Min RPKM: 23.7
Std RPKM: 28.8
Median RPKM: 102.9
GTEX-145MH-2326-SM-5O9AW
191.7
GTEX-YFCO-1726-SM-4W21S
179.8
GTEX-WH7G-1926-SM-4LVMM
178.3
GTEX-1399Q-2826-SM-5IJEZ
173.4
GTEX-111VG-1926-SM-5GIDO
171.9
GTEX-XPT6-1626-SM-4B655
170.5
GTEX-Y9LG-1726-SM-4VBQE
169.1
GTEX-11EI6-2226-SM-5EGJM
168.7
GTEX-RM2N-1326-SM-48FCW
166.3
GTEX-13FTW-1326-SM-5LZZD
165.9
GTEX-11WQK-2826-SM-5EQKH
158.0
GTEX-XPVG-2226-SM-4B65U
155.5
GTEX-RN64-2326-SM-48FDW
152.8
GTEX-Y8E4-2226-SM-5LU94
149.9
GTEX-13OW6-0126-SM-5IJGM
145.9
GTEX-U3ZH-1526-SM-4DXV1
144.5
GTEX-PLZ5-1526-SM-3P5ZX
143.1
GTEX-ZUA1-2726-SM-59HLJ
141.7
GTEX-SNOS-1126-SM-4DM67
141.6
GTEX-SNMC-1026-SM-4DM7K
141.1
GTEX-YB5E-1926-SM-5IFIG
136.4
GTEX-ZA64-1626-SM-5CVME
136.4
GTEX-144GM-0426-SM-5Q5C8
135.8
GTEX-YEC4-1526-SM-4W1YU
135.5
GTEX-145LT-0426-SM-5LUAP
135.3
GTEX-11NSD-1026-SM-5N9BE
134.2
GTEX-ZDTT-2026-SM-5K7TY
131.4
GTEX-T8EM-0126-SM-4DM5R
131.4
GTEX-TKQ1-0926-SM-4DXU2
128.7
GTEX-WOFM-1126-SM-4OOSB
127.1
GTEX-11EQ9-1926-SM-5PNVV
126.5
GTEX-ZV7C-2026-SM-5NQ8F
126.0
GTEX-RUSQ-2126-SM-47JXK
125.8
GTEX-XBEC-0126-SM-4GIDT
125.2
GTEX-V955-1926-SM-4KL1L
125.0
GTEX-147JS-0126-SM-5S2TW
124.7
GTEX-Y5V6-1726-SM-4VDSZ
124.5
GTEX-XBED-2026-SM-4AT5D
124.5
GTEX-111CU-1726-SM-5EGHM
123.4
GTEX-13NYB-2226-SM-5MR58
123.3
GTEX-ZDYS-1326-SM-5IJFF
123.0
GTEX-11LCK-2326-SM-5HL53
122.9
GTEX-S33H-0126-SM-4AD62
122.6
GTEX-O5YT-2126-SM-3MJGD
122.0
GTEX-11ONC-2226-SM-5HL6D
121.4
GTEX-S7SE-0326-SM-4AT5Q
121.3
GTEX-13112-0226-SM-5P9IV
120.8
GTEX-11GS4-2026-SM-5N9CP
120.6
GTEX-X5EB-2026-SM-4E3KA
120.3
GTEX-Q2AI-1226-SM-48U14
120.2
GTEX-144GN-1626-SM-5Q5BU
119.0
GTEX-145MO-0126-SM-5S2QU
118.8
GTEX-ZZ64-1126-SM-5GZXY
116.8
GTEX-ZPU1-2126-SM-57WED
116.6
GTEX-Y111-2426-SM-4TT23
115.6
GTEX-YEC3-1726-SM-5IFIK
114.0
GTEX-ZYFC-0126-SM-5GIEH
113.8
GTEX-UPJH-0126-SM-4IHLL
111.9
GTEX-13N2G-0126-SM-5N9DV
111.5
GTEX-U3ZM-1626-SM-4DXSK
111.2
GTEX-QV44-1726-SM-4R1KG
111.0
GTEX-13NZA-2526-SM-5IJFX
110.7
GTEX-12ZZY-0126-SM-5LZV2
110.5
GTEX-XAJ8-1326-SM-47JYT
109.4
GTEX-QV31-1126-SM-4R1K4
109.2
GTEX-S4Q7-1226-SM-4AD5I
109.0
GTEX-13O21-1226-SM-5J2MK
108.9
GTEX-VJYA-1426-SM-4KL1Y
108.4
GTEX-S95S-1126-SM-4B64E
107.8
GTEX-X3Y1-2626-SM-4PQZI
107.1
GTEX-117XS-2026-SM-5GID1
106.7
GTEX-U8XE-0126-SM-4E3I3
106.7
GTEX-QLQ7-1426-SM-4R1JX
106.2
GTEX-U8T8-1126-SM-4DXUE
105.8
GTEX-13NZB-2026-SM-5MR4M
105.4
GTEX-14ABY-0626-SM-5Q5C9
105.2
GTEX-13O61-2026-SM-5J2M6
105.0
GTEX-1399R-1626-SM-5P9GG
104.7
GTEX-ZQUD-2026-SM-51MSM
104.3
GTEX-T5JC-0726-SM-4DM55
104.3
GTEX-WFON-2026-SM-4LVMW
103.7
GTEX-132QS-1226-SM-5P9GD
103.6
GTEX-11NUK-2626-SM-5A5MB
103.5
GTEX-ZTX8-1126-SM-51MRM
103.3
GTEX-S3XE-1526-SM-4AD5A
103.3
GTEX-13111-1526-SM-5EGJX
103.2
GTEX-OXRL-2126-SM-3NM98
102.6
GTEX-139T6-1226-SM-5IFFC
102.2
GTEX-ZTSS-1526-SM-51MTC
102.2
GTEX-OOBK-2126-SM-3LK5T
99.8
GTEX-XGQ4-2026-SM-4AT6G
99.8
GTEX-117YW-1526-SM-5EGGP
99.4
GTEX-REY6-0126-SM-48FDT
99.2
GTEX-11WQC-2326-SM-5EQKE
99.0
GTEX-WZTO-0326-SM-4PQYZ
98.8
GTEX-V1D1-2126-SM-4JBH4
98.1
GTEX-S7PM-0626-SM-4AD4Q
96.7
GTEX-139TT-2226-SM-5LZWO
96.2
GTEX-QEG4-0126-SM-48TZE
95.6
GTEX-WFG8-1926-SM-4LVM1
94.8
GTEX-QMRM-1526-SM-4R1K6
94.5
GTEX-12C56-1426-SM-5FQSW
93.6
GTEX-13VXU-0726-SM-5J2O7
93.3
GTEX-111YS-2026-SM-5EGGL
93.3
GTEX-YF7O-2026-SM-4W1YE
92.7
GTEX-QLQW-1026-SM-447A9
91.6
GTEX-11NV4-1726-SM-5N9FC
91.5
GTEX-13OVL-0426-SM-5IFG6
89.6
GTEX-11DXZ-2126-SM-59881
89.5
GTEX-R55C-1426-SM-48FED
89.4
GTEX-14753-0626-SM-5Q5CY
89.1
GTEX-ZVZP-2226-SM-57WBF
89.0
GTEX-QEG5-0126-SM-4R1JR
88.3
GTEX-139TS-1726-SM-5IJG5
88.0
GTEX-WK11-0326-SM-4OOS6
87.9
GTEX-OIZH-2126-SM-3NB1P
87.7
GTEX-N7MS-0126-SM-3TW8O
87.3
GTEX-Q2AH-1526-SM-48TZG
87.2
GTEX-SUCS-1326-SM-4DM5T
86.9
GTEX-XMK1-2026-SM-4B65K
86.5
GTEX-11TT1-2226-SM-5GU6B
86.4
GTEX-P4QS-2126-SM-3NMCF
85.4
GTEX-ZVTK-0126-SM-57WDG
85.2
GTEX-OHPM-2126-SM-3LK75
84.9
GTEX-111FC-1926-SM-5GZYC
84.8
GTEX-13N1W-2626-SM-5IJEP
84.8
GTEX-11OF3-1826-SM-5987N
84.7
GTEX-11O72-0726-SM-5P9GO
84.1
GTEX-13OVH-0726-SM-5N9BU
84.1
GTEX-13FHP-2826-SM-5IJFW
84.0
GTEX-ZT9X-1426-SM-5DUX1
83.0
GTEX-WHSB-2126-SM-4M1XF
82.8
GTEX-1339X-1926-SM-5PNVP
82.8
GTEX-U4B1-1526-SM-4DXSL
82.8
GTEX-RWSA-2426-SM-47JXR
82.7
GTEX-11TUW-2226-SM-5EQL9
81.8
GTEX-ZYT6-2726-SM-5GICP
80.7
GTEX-12WSL-2326-SM-5DUXQ
80.5
GTEX-YJ89-0626-SM-4TT3Z
80.2
GTEX-ZT9W-2226-SM-57WFU
79.5
GTEX-144GL-0726-SM-5LU4P
79.3
GTEX-13O1R-0726-SM-5IJEI
78.8
GTEX-NFK9-0126-SM-3LK5H
78.7
GTEX-11EQ8-1426-SM-5EGJR
78.7
GTEX-X261-2326-SM-4PQYU
78.3
GTEX-XLM4-1526-SM-4AT6D
77.1
GTEX-13OW5-2526-SM-5L3I1
76.3
GTEX-11P7K-1026-SM-5HL6Y
76.3
GTEX-1212Z-0326-SM-5FQSJ
75.8
GTEX-11P82-1526-SM-5BC5M
75.8
GTEX-T6MN-2026-SM-4DM7L
75.5
GTEX-12WSI-2126-SM-5GCMV
74.9
GTEX-OOBJ-2126-SM-3NB1N
74.8
GTEX-ZAB5-2426-SM-5CVMW
74.5
GTEX-14A6H-2326-SM-5Q5B5
73.6
GTEX-PW2O-1426-SM-48TCD
72.7
GTEX-OIZI-0126-SM-3NB13
72.4
GTEX-12696-0226-SM-5EGL3
71.9
GTEX-TKQ2-1526-SM-4DXUN
70.1
GTEX-WVLH-2626-SM-4MVNV
68.6
GTEX-13FLW-2126-SM-5N9FD
68.5
GTEX-11ZUS-2726-SM-5FQUA
68.0
GTEX-12WSH-0326-SM-5GCNH
67.0
GTEX-XQ3S-2726-SM-4BOP2
64.2
GTEX-131XE-0426-SM-5IJF4
62.1
GTEX-R55E-0726-SM-48FCZ
61.7
GTEX-12WSM-1326-SM-5GCP9
61.4
GTEX-P4QR-0226-SM-3NMCH
61.4
GTEX-R55D-0126-SM-48FEL
57.1
GTEX-Z93S-1726-SM-5HL8G
56.6
GTEX-ZAB4-0126-SM-5CVMG
39.4
GTEX-147F4-0626-SM-5LUAK
23.7
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.