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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 166.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 100.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 73.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 164.1
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 178.5
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 135.5
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 222.3
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 177.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 209.5
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 98.2
Min RPKM: 12.3
Std RPKM: 16.2
Median RPKM: 50.5
GTEX-11WQC-2326-SM-5EQKE
98.2
GTEX-T6MN-2026-SM-4DM7L
82.3
GTEX-Z93S-1726-SM-5HL8G
81.6
GTEX-OXRL-2126-SM-3NM98
80.6
GTEX-117XS-2026-SM-5GID1
80.4
GTEX-REY6-0126-SM-48FDT
80.1
GTEX-QEG4-0126-SM-48TZE
79.9
GTEX-117YW-1526-SM-5EGGP
77.5
GTEX-Q2AI-1226-SM-48U14
73.5
GTEX-ZTSS-1526-SM-51MTC
73.3
GTEX-12WSH-0326-SM-5GCNH
72.7
GTEX-111VG-1926-SM-5GIDO
72.3
GTEX-14ABY-0626-SM-5Q5C9
71.9
GTEX-11NV4-1726-SM-5N9FC
71.6
GTEX-S7PM-0626-SM-4AD4Q
71.4
GTEX-Y111-2426-SM-4TT23
71.1
GTEX-13VXU-0726-SM-5J2O7
70.7
GTEX-WK11-0326-SM-4OOS6
70.5
GTEX-ZYT6-2726-SM-5GICP
70.0
GTEX-12ZZY-0126-SM-5LZV2
69.9
GTEX-139TS-1726-SM-5IJG5
69.6
GTEX-11ZUS-2726-SM-5FQUA
69.5
GTEX-11OF3-1826-SM-5987N
69.5
GTEX-13FHP-2826-SM-5IJFW
69.4
GTEX-13OVL-0426-SM-5IFG6
68.9
GTEX-S4Q7-1226-SM-4AD5I
68.1
GTEX-11EI6-2226-SM-5EGJM
66.9
GTEX-OIZH-2126-SM-3NB1P
66.0
GTEX-U8T8-1126-SM-4DXUE
65.9
GTEX-ZVTK-0126-SM-57WDG
64.9
GTEX-QV31-1126-SM-4R1K4
64.8
GTEX-145MO-0126-SM-5S2QU
63.8
GTEX-13N1W-2626-SM-5IJEP
63.4
GTEX-13112-0226-SM-5P9IV
62.9
GTEX-TKQ2-1526-SM-4DXUN
62.8
GTEX-QEG5-0126-SM-4R1JR
62.7
GTEX-13111-1526-SM-5EGJX
62.6
GTEX-V1D1-2126-SM-4JBH4
62.1
GTEX-XGQ4-2026-SM-4AT6G
62.1
GTEX-139TT-2226-SM-5LZWO
62.1
GTEX-OOBK-2126-SM-3LK5T
61.7
GTEX-144GM-0426-SM-5Q5C8
61.6
GTEX-12WSL-2326-SM-5DUXQ
61.4
GTEX-XAJ8-1326-SM-47JYT
61.2
GTEX-11DXZ-2126-SM-59881
61.0
GTEX-YEC3-1726-SM-5IFIK
61.0
GTEX-ZQUD-2026-SM-51MSM
60.7
GTEX-UPJH-0126-SM-4IHLL
60.0
GTEX-X5EB-2026-SM-4E3KA
59.9
GTEX-12C56-1426-SM-5FQSW
59.9
GTEX-12WSI-2126-SM-5GCMV
59.9
GTEX-SNOS-1126-SM-4DM67
59.8
GTEX-11GS4-2026-SM-5N9CP
59.7
GTEX-11O72-0726-SM-5P9GO
59.4
GTEX-ZPU1-2126-SM-57WED
59.0
GTEX-ZAB5-2426-SM-5CVMW
58.6
GTEX-11P82-1526-SM-5BC5M
58.4
GTEX-131XE-0426-SM-5IJF4
58.1
GTEX-P4QR-0226-SM-3NMCH
57.8
GTEX-OHPM-2126-SM-3LK75
57.7
GTEX-PW2O-1426-SM-48TCD
57.4
GTEX-N7MS-0126-SM-3TW8O
57.1
GTEX-12696-0226-SM-5EGL3
57.1
GTEX-11LCK-2326-SM-5HL53
56.8
GTEX-11EQ9-1926-SM-5PNVV
56.6
GTEX-Q2AH-1526-SM-48TZG
56.5
GTEX-XLM4-1526-SM-4AT6D
56.4
GTEX-11NSD-1026-SM-5N9BE
56.3
GTEX-1212Z-0326-SM-5FQSJ
56.3
GTEX-XBEC-0126-SM-4GIDT
55.2
GTEX-YEC4-1526-SM-4W1YU
55.0
GTEX-ZYFC-0126-SM-5GIEH
54.9
GTEX-WHSB-2126-SM-4M1XF
54.6
GTEX-13FLW-2126-SM-5N9FD
54.4
GTEX-11NUK-2626-SM-5A5MB
53.9
GTEX-T5JC-0726-SM-4DM55
53.3
GTEX-144GL-0726-SM-5LU4P
53.2
GTEX-S95S-1126-SM-4B64E
53.2
GTEX-WH7G-1926-SM-4LVMM
53.1
GTEX-111CU-1726-SM-5EGHM
52.8
GTEX-RUSQ-2126-SM-47JXK
52.5
GTEX-R55E-0726-SM-48FCZ
51.8
GTEX-S7SE-0326-SM-4AT5Q
51.8
GTEX-WOFM-1126-SM-4OOSB
51.5
GTEX-132QS-1226-SM-5P9GD
50.8
GTEX-ZDYS-1326-SM-5IJFF
50.5
GTEX-V955-1926-SM-4KL1L
50.5
GTEX-13NZB-2026-SM-5MR4M
50.3
GTEX-145MH-2326-SM-5O9AW
50.2
GTEX-ZT9W-2226-SM-57WFU
50.2
GTEX-11EQ8-1426-SM-5EGJR
50.2
GTEX-111FC-1926-SM-5GZYC
50.1
GTEX-R55D-0126-SM-48FEL
49.3
GTEX-ZUA1-2726-SM-59HLJ
49.0
GTEX-14753-0626-SM-5Q5CY
48.7
GTEX-ZV7C-2026-SM-5NQ8F
48.6
GTEX-ZA64-1626-SM-5CVME
48.4
GTEX-X3Y1-2626-SM-4PQZI
48.3
GTEX-U8XE-0126-SM-4E3I3
48.3
GTEX-XQ3S-2726-SM-4BOP2
48.1
GTEX-TKQ1-0926-SM-4DXU2
48.0
GTEX-13NZA-2526-SM-5IJFX
47.4
GTEX-T8EM-0126-SM-4DM5R
47.4
GTEX-SUCS-1326-SM-4DM5T
47.1
GTEX-ZVZP-2226-SM-57WBF
47.1
GTEX-OOBJ-2126-SM-3NB1N
46.5
GTEX-U3ZM-1626-SM-4DXSK
46.3
GTEX-13OW5-2526-SM-5L3I1
45.8
GTEX-U4B1-1526-SM-4DXSL
45.8
GTEX-13NYB-2226-SM-5MR58
45.8
GTEX-139T6-1226-SM-5IFFC
45.6
GTEX-R55C-1426-SM-48FED
45.6
GTEX-147JS-0126-SM-5S2TW
45.5
GTEX-XMK1-2026-SM-4B65K
45.4
GTEX-YFCO-1726-SM-4W21S
45.1
GTEX-WZTO-0326-SM-4PQYZ
44.9
GTEX-111YS-2026-SM-5EGGL
44.7
GTEX-SNMC-1026-SM-4DM7K
44.5
GTEX-13O1R-0726-SM-5IJEI
44.4
GTEX-YF7O-2026-SM-4W1YE
44.1
GTEX-ZZ64-1126-SM-5GZXY
43.5
GTEX-WFG8-1926-SM-4LVM1
43.5
GTEX-P4QS-2126-SM-3NMCF
43.5
GTEX-RWSA-2426-SM-47JXR
43.0
GTEX-11TUW-2226-SM-5EQL9
42.7
GTEX-13N2G-0126-SM-5N9DV
42.7
GTEX-Y5V6-1726-SM-4VDSZ
42.7
GTEX-1399Q-2826-SM-5IJEZ
42.1
GTEX-VJYA-1426-SM-4KL1Y
41.3
GTEX-144GN-1626-SM-5Q5BU
41.2
GTEX-145LT-0426-SM-5LUAP
40.9
GTEX-S3XE-1526-SM-4AD5A
39.7
GTEX-QMRM-1526-SM-4R1K6
39.5
GTEX-11P7K-1026-SM-5HL6Y
39.2
GTEX-QV44-1726-SM-4R1KG
39.2
GTEX-13FTW-1326-SM-5LZZD
38.4
GTEX-ZT9X-1426-SM-5DUX1
37.4
GTEX-RM2N-1326-SM-48FCW
36.8
GTEX-QLQ7-1426-SM-4R1JX
36.1
GTEX-12WSM-1326-SM-5GCP9
35.5
GTEX-YB5E-1926-SM-5IFIG
35.3
GTEX-WVLH-2626-SM-4MVNV
35.2
GTEX-X261-2326-SM-4PQYU
34.6
GTEX-13O61-2026-SM-5J2M6
34.0
GTEX-XPT6-1626-SM-4B655
32.9
GTEX-XBED-2026-SM-4AT5D
31.3
GTEX-1399R-1626-SM-5P9GG
31.2
GTEX-WFON-2026-SM-4LVMW
31.0
GTEX-11WQK-2826-SM-5EQKH
30.2
GTEX-YJ89-0626-SM-4TT3Z
30.0
GTEX-1339X-1926-SM-5PNVP
29.8
GTEX-13OVH-0726-SM-5N9BU
29.6
GTEX-QLQW-1026-SM-447A9
27.5
GTEX-NFK9-0126-SM-3LK5H
27.5
GTEX-11TT1-2226-SM-5GU6B
27.0
GTEX-ZTX8-1126-SM-51MRM
26.8
GTEX-13O21-1226-SM-5J2MK
26.7
GTEX-OIZI-0126-SM-3NB13
24.8
GTEX-13OW6-0126-SM-5IJGM
23.3
GTEX-S33H-0126-SM-4AD62
21.9
GTEX-PLZ5-1526-SM-3P5ZX
21.1
GTEX-Y9LG-1726-SM-4VBQE
20.7
GTEX-11ONC-2226-SM-5HL6D
20.4
GTEX-O5YT-2126-SM-3MJGD
20.4
GTEX-XPVG-2226-SM-4B65U
20.3
GTEX-U3ZH-1526-SM-4DXV1
17.8
GTEX-14A6H-2326-SM-5Q5B5
17.7
GTEX-147F4-0626-SM-5LUAK
17.6
GTEX-RN64-2326-SM-48FDW
16.9
GTEX-Y8E4-2226-SM-5LU94
15.1
GTEX-ZAB4-0126-SM-5CVMG
14.2
GTEX-ZDTT-2026-SM-5K7TY
12.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.