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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:39.3TPM
GTEx:14.1RPKM
FANTOM5:53.6Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Low
Glandular cells:Low
Myoepithelial cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA018123

 

Adipocytes

Medium  

Glandular cells

Low  

Myoepithelial cells

Medium  
 

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

39.3

overview Female, age 52
Sample 1
TPM: 34.8
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 39.9
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 48.8
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 33.7
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

14.1

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 14.1
Samples: 214

Max RPKM: 40.3
Min RPKM: 3.8
Std RPKM: 7.1
Median RPKM: 13.3
GTEX-T2IS-1526-SM-32QPR 40.3
GTEX-R3RS-0626-SM-48FE1 39.8
GTEX-X4EP-2926-SM-3P5YQ 38.9
GTEX-VJWN-0726-SM-3GIJ8 34.9
GTEX-XOT4-0726-SM-4GIAW 32.4
GTEX-13O3O-0826-SM-5K7WE 32.1
GTEX-ZVT2-1826-SM-5NQ8W 31.0
GTEX-11P7K-0726-SM-5EGKX 30.6
GTEX-12WSK-2226-SM-5GCO5 28.5
GTEX-WI4N-1426-SM-3LK7H 28.0
GTEX-Y5LM-1726-SM-4VDSX 27.6
GTEX-ZV7C-1826-SM-5NQ83 27.3
GTEX-13113-1726-SM-5GCOO 27.0
GTEX-Y5V5-2126-SM-4WWFO 26.9
GTEX-ZZPU-0626-SM-5E43T 26.8
GTEX-S4P3-1326-SM-4AD6V 26.7
GTEX-WYBS-0926-SM-3NM94 26.1
GTEX-R55F-1726-SM-2TF4R 25.7
GTEX-ZF29-1926-SM-5S2P1 25.6
GTEX-SE5C-2126-SM-4BRUJ 25.2
GTEX-RU72-0626-SM-46MUI 23.5
GTEX-TMMY-0726-SM-33HBE 23.1
GTEX-13PL6-2926-SM-5L3I2 23.0
GTEX-1399U-1826-SM-5PNZ1 22.1
GTEX-ZLV1-1426-SM-4WWES 22.1
GTEX-XMD2-0926-SM-4WWEF 22.0
GTEX-WXYG-2226-SM-4E3IM 22.0
GTEX-UJHI-1426-SM-3DB9C 21.9
GTEX-ZF3C-2326-SM-5S2MZ 21.5
GTEX-11EM3-1326-SM-5N9C6 21.2
GTEX-XYKS-1326-SM-4BRUN 20.7
GTEX-T6MO-0326-SM-32QOK 20.6
GTEX-ZTX8-1226-SM-4YCE9 20.0
GTEX-13FTY-2226-SM-5J1ND 20.0
GTEX-WRHU-0326-SM-3MJFY 20.0
GTEX-13QIC-2326-SM-5LU5N 20.0
GTEX-1269C-2426-SM-5FQSN 19.9
GTEX-Y3IK-2326-SM-4WWDT 19.9
GTEX-Q2AG-0326-SM-48U1O 19.6
GTEX-QDT8-0626-SM-48TYW 19.6
GTEX-ZY6K-1626-SM-5GZWV 19.4
GTEX-ZC5H-2626-SM-5J2MG 18.9
GTEX-ZXES-0826-SM-5E43C 18.9
GTEX-S341-1526-SM-4AD6K 18.8
GTEX-13OW5-2226-SM-5L3HC 18.8
GTEX-14AS3-1626-SM-5S2OY 18.7
GTEX-11EMC-2026-SM-5A5JV 18.5
GTEX-111YS-1926-SM-5GICC 18.1
GTEX-SIU7-1626-SM-4BRUK 18.0
GTEX-145LT-0726-SM-5S2VM 17.9
GTEX-Y114-2026-SM-4TT7L 17.7
GTEX-ZTTD-1026-SM-51MRD 17.5
GTEX-XUW1-2326-SM-4BOO5 17.5
GTEX-1122O-1226-SM-5H113 17.3
GTEX-WYVS-1726-SM-3NMAY 17.3
GTEX-ZAJG-0626-SM-5HL8X 17.1
GTEX-13N11-1726-SM-5J1OJ 17.1
GTEX-T5JC-2126-SM-32PMO 16.9
GTEX-S4UY-0726-SM-4AD6X 16.9
GTEX-WYJK-1326-SM-3NB2T 16.8
GTEX-12ZZX-1126-SM-5EGKB 16.7
GTEX-11WQC-1726-SM-5GU4W 16.7
GTEX-13W3W-1226-SM-5LU4H 16.6
GTEX-RWS6-1926-SM-47JXY 16.6
GTEX-QEG5-0726-SM-4R1JQ 16.6
GTEX-11PRG-0826-SM-5EQ6A 16.5
GTEX-X15G-1626-SM-3NMB3 16.5
GTEX-ZVE2-1226-SM-5NQ8R 16.4
GTEX-ZVT4-1026-SM-57WC4 16.3
GTEX-UPK5-2326-SM-3P5Z8 16.2
GTEX-ZVTK-0326-SM-51MRR 16.2
GTEX-13D11-1026-SM-5IJFB 16.1
GTEX-XUJ4-1926-SM-4BOOV 16.1
GTEX-T6MN-0726-SM-32PML 16.0
GTEX-11EI6-0626-SM-5985T 15.8
GTEX-XUZC-1626-SM-4BRVP 15.8
GTEX-X261-0626-SM-3NMD9 15.7
GTEX-1314G-1226-SM-5BC6D 15.6
GTEX-ZF2S-2026-SM-5E461 15.6
GTEX-TML8-1226-SM-32QON 15.6
GTEX-11P81-1926-SM-5BC53 15.5
GTEX-13NZ8-0126-SM-5IJCT 15.4
GTEX-WOFL-0826-SM-3MJG1 15.3
GTEX-T5JW-2026-SM-4DM63 15.1
GTEX-YFC4-1426-SM-5IFJG 15.0
GTEX-U412-1826-SM-4DXTJ 14.8
GTEX-Y3I4-1526-SM-4TT7K 14.8
GTEX-147F4-2826-SM-5NQBN 14.8
GTEX-11GS4-2126-SM-5A5KR 14.7
GTEX-139T8-0826-SM-5L3DE 14.7
GTEX-U3ZH-1426-SM-4DXSR 14.7
GTEX-QEL4-2126-SM-447AE 14.6
GTEX-Y8LW-1626-SM-5IFHX 14.5
GTEX-ZVZQ-0826-SM-51MRF 14.2
GTEX-145MO-0826-SM-5NQBL 14.2
GTEX-13NZ9-1026-SM-5MR5K 14.1
GTEX-ZU9S-1926-SM-5NQBP 14.1
GTEX-133LE-1726-SM-5K7VQ 13.9
GTEX-11DXW-0626-SM-5N9ER 13.9
GTEX-W5X1-2326-SM-3GIL6 13.9
GTEX-146FH-0826-SM-5SI8T 13.9
GTEX-13FHO-0826-SM-5L3E8 13.6
GTEX-14E6E-1326-SM-5S2NR 13.6
GTEX-TKQ1-0226-SM-33HB5 13.5
GTEX-11TT1-2126-SM-5GU5Y 13.4
GTEX-131XW-0726-SM-5EGK3 13.3
GTEX-1211K-1926-SM-5EQLB 13.3
GTEX-1313W-0826-SM-5EQ4T 13.3
GTEX-14ABY-2126-SM-5QGQZ 12.9
GTEX-131YS-0626-SM-5EGKL 12.9
GTEX-1117F-2826-SM-5GZXL 12.8
GTEX-XBED-1626-SM-47JYN 12.7
GTEX-U3ZN-1926-SM-4DXSG 12.7
GTEX-VUSG-2226-SM-4KKZO 12.5
GTEX-ZV6S-1826-SM-5NQ8D 12.5
GTEX-13CF2-2026-SM-5K7VI 12.4
GTEX-13NZB-2126-SM-5MR4Y 12.1
GTEX-13FTX-1126-SM-5N9EN 12.0
GTEX-ZPIC-1126-SM-5BC7F 12.0
GTEX-ZYWO-2326-SM-5GZY4 11.9
GTEX-13OW8-0226-SM-5K7UP 11.9
GTEX-13W46-0826-SM-5LU3H 11.8
GTEX-R53T-1526-SM-48FEK 11.8
GTEX-S33H-0326-SM-4AD6N 11.5
GTEX-U8XE-0826-SM-4E3J1 11.2
GTEX-Y111-2026-SM-4SOJA 11.2
GTEX-ZEX8-2226-SM-57WC6 11.1
GTEX-12WSM-1726-SM-5BC6J 10.9
GTEX-T2YK-2226-SM-32QPT 10.9
GTEX-1192X-2326-SM-5987X 10.8
GTEX-YJ8O-2226-SM-5IFHW 10.8
GTEX-13O3P-0826-SM-5L3DH 10.8
GTEX-14753-2426-SM-5LU8U 10.7
GTEX-S7SE-0826-SM-4AT4D 10.7
GTEX-11NSD-0926-SM-5N9DR 10.6
GTEX-11NV4-2026-SM-5N9DG 10.5
GTEX-11DZ1-0326-SM-5N9BN 10.5
GTEX-RUSQ-2026-SM-4GIAK 10.3
GTEX-S32W-2026-SM-4AD6E 10.3
GTEX-XV7Q-2326-SM-4BRVZ 10.2
GTEX-WFON-1826-SM-3GILG 10.2
GTEX-11LCK-2426-SM-5HL5F 10.2
GTEX-TKQ2-1826-SM-33HB2 10.1
GTEX-12WSN-1326-SM-5GCNT 10.1
GTEX-XMD1-0826-SM-4AT52 10.1
GTEX-12WSB-0626-SM-59HJO 9.9
GTEX-REY6-2426-SM-48FF5 9.9
GTEX-11O72-2126-SM-5N9FO 9.9
GTEX-132AR-0826-SM-5EGK6 9.9
GTEX-11I78-2226-SM-5PNYA 9.8
GTEX-11OF3-1926-SM-59889 9.4
GTEX-UTHO-1026-SM-3GAF7 9.4
GTEX-132Q8-1426-SM-5EGK7 9.2
GTEX-139TU-0626-SM-5KM3X 9.1
GTEX-S4Q7-1126-SM-4AD6R 8.8
GTEX-117XS-1926-SM-5GICO 8.8
GTEX-13O61-1826-SM-5KM4I 8.7
GTEX-QVJO-1826-SM-447C9 8.6
GTEX-144GL-2026-SM-5LU3O 8.5
GTEX-ZLFU-2126-SM-4WWEV 8.5
GTEX-ZUA1-1526-SM-59HLS 8.4
GTEX-ZYFC-0826-SM-5E44K 8.4
GTEX-145MN-1926-SM-5SIAI 8.3
GTEX-12BJ1-1826-SM-5HL9N 8.3
GTEX-13O3Q-2226-SM-5KM4O 8.1
GTEX-YFCO-1826-SM-4W1YH 8.1
GTEX-ZWKS-2826-SM-5NQ74 7.9
GTEX-ZDTT-2126-SM-5S2OJ 7.9
GTEX-YEC3-1026-SM-5IFI5 7.8
GTEX-Y5V6-2126-SM-4WWFX 7.8
GTEX-XQ8I-2426-SM-4WAXY 7.7
GTEX-13S86-1226-SM-5S2OA 7.5
GTEX-11DXY-2326-SM-5GICW 7.3
GTEX-144GM-0926-SM-5O994 7.3
GTEX-XGQ4-0926-SM-4AT4U 7.2
GTEX-ZT9W-2026-SM-51MRA 7.1
GTEX-YB5E-1726-SM-5IFJ3 7.1
GTEX-ZYW4-0826-SM-5GIDG 7.0
GTEX-X4XY-0926-SM-4E3JD 7.0
GTEX-11EQ9-1826-SM-5Q5AJ 7.0
GTEX-PSDG-1626-SM-48TCQ 7.0
GTEX-117YX-1426-SM-5H12H 6.9
GTEX-11WQK-2426-SM-5GU5C 6.9
GTEX-145ME-1526-SM-5Q5F2 6.8
GTEX-ZZ64-1226-SM-5E43R 6.7
GTEX-11ONC-2126-SM-5HL6E 6.7
GTEX-12KS4-0126-SM-5Q5A5 6.7
GTEX-ZA64-1526-SM-5CVMD 6.6
GTEX-YB5K-1626-SM-5IFIN 6.2
GTEX-11GSO-1926-SM-5A5K3 6.2
GTEX-R55D-0826-SM-48FEA 6.2
GTEX-ZQG8-0726-SM-5P9H9 6.1
GTEX-139T6-1626-SM-5PNYZ 6.1
GTEX-13FTW-1426-SM-5LZWZ 6.1
GTEX-Y8E4-1626-SM-5S2MW 6.0
GTEX-11ZUS-0826-SM-5FQUY 5.8
GTEX-XQ3S-1326-SM-4BOPQ 5.8
GTEX-ZDYS-1126-SM-5K7UB 5.8
GTEX-11TUW-1826-SM-5BC5D 5.7
GTEX-ZYT6-0126-SM-5E45J 5.7
GTEX-WY7C-2726-SM-3NB3P 5.5
GTEX-132NY-0826-SM-5K7Y7 5.5
GTEX-13CF3-2126-SM-5IFJP 5.2
GTEX-ZDXO-0126-SM-5S2ND 5.1
GTEX-Y9LG-1426-SM-5IFJZ 5.1
GTEX-11ZTT-2326-SM-5EQLG 5.0
GTEX-11P82-1326-SM-5HL62 5.0
GTEX-13PVQ-1026-SM-5KM3M 4.8
GTEX-ZAB4-2526-SM-5HL8M 4.6
GTEX-13N1W-0626-SM-5MR4U 4.4
GTEX-QMRM-1626-SM-4R1KV 4.4
GTEX-ZQUD-1926-SM-51MSA 4.4
GTEX-XMK1-1126-SM-4IHJ8 3.8
GTEX-11DXZ-1926-SM-5GZZL 3.8
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

53.6

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 53.6
FF:10080-102A8 77 years, female 53.6

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