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TISSUE ATLAS PRIMARY DATA ESOPHAGUS

GENE/PROTEIN

Antibody validation


Dictionary

Esophagus

Tissue proteome

Esophagus

ESOPHAGUS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:64.7TPM
GTEx:15.9RPKM
FANTOM5:66.2Tags Per Million

ESOPHAGUS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Squamous epithelial cells

Not detected   Medium  
   
   
   

ESOPHAGUS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

64.7

overview Female, age 70
Sample 1
TPM: 37.7
Cell types%
Squamous epithelial cells: 35
Smooth muscle cells: 15
Skeletal muscle cells: 5
Other cell types: 45
overview Male, age 38
Sample 2
TPM: 104.3
Cell types%
Squamous epithelial cells: 60
Smooth muscle cells: 20
Other cell types: 20
overview Male, age 76
Sample 3
TPM: 51.9
Cell types%
Squamous epithelial cells: 45
Smooth muscle cells: 15
Other cell types: 40

ESOPHAGUS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

15.9

GTEx sample id

RPKM

 

Esophagus - Mucosa

Esophagus - Mucosa
RPKM: 15.9
Samples: 286

Max RPKM: 42.2
Min RPKM: 5.4
Std RPKM: 5.8
Median RPKM: 15.5
GTEX-11VI4-0526-SM-5EQ48 42.2
GTEX-11TT1-0526-SM-5P9JO 34.3
GTEX-11EM3-0826-SM-5N9CC 33.8
GTEX-T5JW-1326-SM-4DM5G 31.0
GTEX-S4P3-0426-SM-4AD56 30.9
GTEX-13QBU-1026-SM-5LU3R 30.2
GTEX-13O21-0626-SM-5IJDI 30.1
GTEX-XUZC-0426-SM-4BOPE 30.1
GTEX-1399U-1026-SM-5J1OC 29.9
GTEX-145ME-0526-SM-5QGQV 29.8
GTEX-13X6I-1026-SM-5LU4C 28.8
GTEX-WEY5-0926-SM-4LMI4 28.4
GTEX-P4PP-0626-SM-3NM9X 27.7
GTEX-UJMC-0926-SM-4IHLK 25.9
GTEX-RUSQ-0826-SM-47JWW 25.8
GTEX-13FH7-0526-SM-5IJF8 25.7
GTEX-14BMU-0926-SM-5S2QB 25.7
GTEX-R55C-0826-SM-48FCL 25.4
GTEX-ZZ64-0226-SM-5E44X 25.3
GTEX-Y9LG-0626-SM-4WWDH 25.3
GTEX-13CF3-1626-SM-5IFG9 24.8
GTEX-ZYFG-1126-SM-5GICY 24.7
GTEX-PWCY-0726-SM-48TCS 24.1
GTEX-13O1R-1326-SM-5IJF5 23.7
GTEX-XXEK-0326-SM-4BRVV 23.5
GTEX-1211K-0926-SM-5FQTL 23.4
GTEX-ZXES-1126-SM-5GZXN 23.4
GTEX-ZF29-1326-SM-4WWB6 23.2
GTEX-WRHK-0526-SM-4MVOF 23.0
GTEX-ZVT2-1326-SM-5E45H 22.9
GTEX-OXRL-0626-SM-3NM9C 22.6
GTEX-146FR-0426-SM-5SI97 22.3
GTEX-ZTPG-1626-SM-5DUX2 22.3
GTEX-13RTK-0526-SM-5S2QF 22.3
GTEX-WFJO-0826-SM-4LVM5 22.0
GTEX-P4QS-0626-SM-3NMD1 21.9
GTEX-Y114-0926-SM-4TT7J 21.7
GTEX-P4QT-0626-SM-3NMCP 21.7
GTEX-11EQ9-0726-SM-5A5K2 21.4
GTEX-145LT-1126-SM-5LUA1 21.4
GTEX-Q2AH-0826-SM-48TZN 21.3
GTEX-RM2N-0726-SM-48FD5 21.3
GTEX-ZYW4-1326-SM-5E45N 21.2
GTEX-145MO-1426-SM-5Q5BS 21.2
GTEX-VJYA-0726-SM-4KL1T 21.2
GTEX-ZQUD-0426-SM-57WFR 21.1
GTEX-XV7Q-1126-SM-4BRVS 21.1
GTEX-U3ZM-0526-SM-4DXTB 21.0
GTEX-WOFM-0626-SM-4OOS3 21.0
GTEX-13FTW-1626-SM-5KM4N 21.0
GTEX-WH7G-0926-SM-4LVMJ 21.0
GTEX-12WSK-1126-SM-5LZV8 20.8
GTEX-13FLV-1126-SM-5J2NO 20.8
GTEX-Y3I4-1226-SM-4TT8N 20.8
GTEX-T6MO-0526-SM-4DM6R 20.6
GTEX-132QS-1426-SM-5P9GE 20.6
GTEX-131XF-0826-SM-5GICG 20.6
GTEX-YF7O-0926-SM-5IFIF 20.5
GTEX-QDVN-1026-SM-48TZA 20.4
GTEX-13W3W-1626-SM-5LU35 20.3
GTEX-X4XY-1726-SM-46MVO 20.3
GTEX-WFG7-1126-SM-4LMK3 20.2
GTEX-13X6H-1326-SM-5LU42 20.2
GTEX-111YS-0926-SM-5EGGI 20.2
GTEX-ZT9X-0526-SM-5GCOP 20.0
GTEX-Z9EW-0526-SM-5HL8S 19.9
GTEX-SUCS-0726-SM-4DM7J 19.8
GTEX-QCQG-0626-SM-48U21 19.6
GTEX-11XUK-0826-SM-5GU6P 19.6
GTEX-139T6-0626-SM-5IFF9 19.5
GTEX-14H4A-1626-SM-5SI69 19.5
GTEX-XBED-1026-SM-48TCB 19.4
GTEX-Y5V6-1026-SM-4VBS2 19.3
GTEX-OOBK-0625-SM-3LK5P 19.3
GTEX-ZVP2-1326-SM-57WCE 19.3
GTEX-XLM4-2326-SM-4TT2D 19.3
GTEX-WFON-0826-SM-4LVMI 19.2
GTEX-13PVR-1826-SM-5Q5CC 19.1
GTEX-147F3-0826-SM-5NQA7 19.0
GTEX-R55D-1126-SM-48FEB 18.9
GTEX-Y5LM-1026-SM-4VDSQ 18.9
GTEX-11DXX-1126-SM-5GZZK 18.8
GTEX-TMMY-1126-SM-4DXSX 18.7
GTEX-R55G-1026-SM-48FDI 18.6
GTEX-S3XE-0926-SM-4AD4S 18.6
GTEX-144GN-0626-SM-5O9B2 18.6
GTEX-13FTX-0526-SM-5IFGS 18.6
GTEX-OXRK-1326-SM-3NB1A 18.4
GTEX-V955-1126-SM-4JBH3 18.3
GTEX-QLQW-0526-SM-4R1KS 18.3
GTEX-ZTX8-0226-SM-5E44D 18.3
GTEX-PLZ5-0926-SM-3TW8L 18.2
GTEX-QESD-0826-SM-47J4G 18.1
GTEX-QLQ7-0926-SM-447BC 18.1
GTEX-ZTSS-0626-SM-59867 18.1
GTEX-14E6E-0726-SM-5S2R3 18.1
GTEX-ZPCL-1426-SM-57WEC 18.1
GTEX-ZAB5-0926-SM-5CVMV 18.0
GTEX-S341-0526-SM-4AD5U 17.8
GTEX-SNMC-0526-SM-4DM69 17.8
GTEX-TKQ1-0326-SM-4DXSM 17.8
GTEX-14E1K-1226-SM-5S2PD 17.8
GTEX-R3RS-1326-SM-48FE7 17.7
GTEX-XYKS-1526-SM-4BRUP 17.7
GTEX-ZYWO-1026-SM-5E45U 17.6
GTEX-146FQ-1026-SM-5LU8I 17.6
GTEX-XUJ4-1026-SM-4BOPB 17.5
GTEX-ZPU1-1426-SM-4WWFU 17.4
GTEX-XGQ4-1526-SM-4AT6H 17.4
GTEX-S95S-0426-SM-4B64I 17.4
GTEX-QEG5-1426-SM-447AS 17.4
GTEX-133LE-0626-SM-5IFFJ 17.3
GTEX-SNOS-0626-SM-4DM5F 17.2
GTEX-111CU-0726-SM-5GZYD 17.2
GTEX-11ZU8-1526-SM-5EGHX 17.2
GTEX-X4LF-0626-SM-4QASB 17.1
GTEX-13OVJ-1226-SM-5L3HA 17.0
GTEX-RTLS-1126-SM-46MUQ 16.9
GTEX-13U4I-1126-SM-5LU3S 16.8
GTEX-Y8LW-0726-SM-5IFI1 16.8
GTEX-12BJ1-1626-SM-5HL8Y 16.7
GTEX-ZDYS-0826-SM-4WWCR 16.7
GTEX-ZA64-0626-SM-5HL9O 16.6
GTEX-14C38-2126-SM-5RQJO 16.6
GTEX-RU1J-0326-SM-46MUM 16.5
GTEX-11LCK-1726-SM-5S2OQ 16.5
GTEX-13111-0826-SM-5LZV3 16.4
GTEX-ZF2S-1226-SM-4WWAX 16.4
GTEX-14ICL-0526-SM-5RQJ6 16.4
GTEX-11TUW-1326-SM-5EQKV 16.4
GTEX-PWN1-0626-SM-48TDT 16.4
GTEX-OIZH-0626-SM-3NB1L 16.2
GTEX-131XG-1026-SM-5GCMX 16.2
GTEX-XMD2-1326-SM-4YCET 16.2
GTEX-ZY6K-0626-SM-59HJL 16.2
GTEX-YEC3-2526-SM-4YCDN 16.1
GTEX-144GM-1426-SM-5LU31 16.0
GTEX-11I78-1526-SM-5A5K7 15.9
GTEX-S4Q7-0626-SM-4AD5M 15.8
GTEX-WFG8-1226-SM-4V6EI 15.8
GTEX-145MF-1426-SM-5O9B6 15.7
GTEX-S32W-0926-SM-4AD5X 15.7
GTEX-144GO-2726-SM-5O9A2 15.6
GTEX-PLZ6-0526-SM-3P61C 15.5
GTEX-12WSL-1526-SM-5GCP8 15.3
GTEX-UJHI-0826-SM-4IHLM 15.3
GTEX-11P82-0526-SM-5986P 15.3
GTEX-SE5C-1226-SM-4BRWV 15.3
GTEX-12C56-1226-SM-5FQSU 15.2
GTEX-P78B-1026-SM-3NMC4 15.2
GTEX-13D11-1926-SM-5IFGB 15.2
GTEX-NPJ8-1926-SM-3MJGB 15.1
GTEX-X15G-0826-SM-4PQZD 15.1
GTEX-P4PQ-0626-SM-3NMCU 15.0
GTEX-R53T-1126-SM-48FD4 14.7
GTEX-PSDG-1326-SM-48TD2 14.7
GTEX-ZGAY-1126-SM-4WWBS 14.7
GTEX-13X6K-2126-SM-5O9D4 14.7
GTEX-145MN-1026-SM-5NQ9G 14.6
GTEX-13OVG-0626-SM-5IFEP 14.5
GTEX-RWS6-0826-SM-47JXF 14.5
GTEX-ZT9W-1326-SM-51MTB 14.3
GTEX-T8EM-0526-SM-4DM64 14.2
GTEX-ZLV1-0526-SM-4WWD4 14.2
GTEX-12KS4-0926-SM-5BC5S 14.2
GTEX-XQ8I-1526-SM-4BOOH 14.1
GTEX-U4B1-0826-SM-4DXTW 14.1
GTEX-117YX-1626-SM-5GZZG 14.0
GTEX-W5WG-1626-SM-4LMKG 13.9
GTEX-UPIC-1026-SM-4IHLT 13.9
GTEX-1122O-1726-SM-5GICM 13.9
GTEX-11DZ1-2026-SM-5A5KG 13.8
GTEX-11NSD-1126-SM-5N9BQ 13.8
GTEX-12696-1326-SM-5FQTJ 13.7
GTEX-U3ZN-1726-SM-4DXUQ 13.6
GTEX-13S86-0826-SM-5SI6J 13.6
GTEX-NFK9-1126-SM-3LK78 13.5
GTEX-XBEW-1326-SM-4AT63 13.4
GTEX-REY6-1326-SM-48FDO 13.4
GTEX-Y111-1626-SM-57WCY 13.4
GTEX-TSE9-1226-SM-4DXTM 13.3
GTEX-1212Z-2126-SM-5FQTM 13.2
GTEX-OIZI-1426-SM-3NB1T 13.2
GTEX-1399S-1326-SM-5P9GH 13.2
GTEX-XMK1-1326-SM-4B65Q 13.1
GTEX-14DAQ-1426-SM-5RQJD 12.9
GTEX-11P81-0826-SM-5P9GR 12.8
GTEX-146FH-1726-SM-5QGQ2 12.8
GTEX-11DYG-1326-SM-5N9DO 12.8
GTEX-U3ZH-1026-SM-4DXUZ 12.6
GTEX-144FL-2726-SM-5O98Z 12.6
GTEX-1399R-0826-SM-5IJEL 12.6
GTEX-YECK-1626-SM-5IFHQ 12.5
GTEX-U8XE-1726-SM-4E3IF 12.5
GTEX-139UW-1126-SM-5IJEJ 12.4
GTEX-Y5V5-1626-SM-4VDSG 12.3
GTEX-ZYY3-1526-SM-5SIA9 12.3
GTEX-XOTO-2126-SM-4B64U 12.2
GTEX-ZYVF-2226-SM-5GIDD 12.2
GTEX-ZF3C-1626-SM-4WWB4 12.1
GTEX-ZZPT-1426-SM-5N9C5 12.0
GTEX-Y8E4-1726-SM-5LU9G 12.0
GTEX-QV44-1126-SM-4R1KO 12.0
GTEX-ZAB4-1126-SM-5HL86 11.8
GTEX-12ZZW-1726-SM-5DUVD 11.5
GTEX-1497J-2726-SM-5SI9W 11.5
GTEX-13OVI-2626-SM-5KM4T 11.5
GTEX-O5YV-1026-SM-3LK72 11.5
GTEX-TML8-1526-SM-4DXUX 11.4
GTEX-S33H-0826-SM-4AD5Y 11.4
GTEX-N7MT-0326-SM-48TDP 11.3
GTEX-YB5E-0926-SM-4WWDQ 11.3
GTEX-QEL4-1426-SM-447AC 11.2
GTEX-132Q8-1826-SM-5EGIY 11.2
GTEX-145LS-1826-SM-5LUAZ 10.9
GTEX-12WSA-1426-SM-5EGJU 10.9
GTEX-12WSD-1826-SM-5GCOA 10.8
GTEX-11DXZ-1226-SM-5H11L 10.8
GTEX-132AR-2226-SM-5J2NT 10.8
GTEX-OIZG-1026-SM-3LK5X 10.8
GTEX-139TU-1226-SM-5J2NL 10.7
GTEX-R45C-1226-SM-48FEE 10.7
GTEX-QDVJ-0726-SM-48U1W 10.7
GTEX-13PVQ-1726-SM-5IFF3 10.6
GTEX-ZG7Y-1126-SM-4WWEZ 10.6
GTEX-11GSP-1826-SM-5N9DQ 10.5
GTEX-Q2AI-0626-SM-48TZU 10.4
GTEX-RU72-0726-SM-46MUW 10.3
GTEX-VUSG-1226-SM-4KKZF 10.3
GTEX-11P7K-1326-SM-5BC5G 10.2
GTEX-13W46-1926-SM-5J2MF 10.1
GTEX-139YR-1726-SM-5IFFK 10.1
GTEX-T5JC-1726-SM-4DM6U 10.1
GTEX-13OW8-2326-SM-5L3I9 10.0
GTEX-ZYT6-1126-SM-5GZYR 10.0
GTEX-X4EO-1226-SM-4QARR 10.0
GTEX-V1D1-1026-SM-4JBHE 10.0
GTEX-X585-1226-SM-46MW7 10.0
GTEX-131XE-1426-SM-5HL7V 9.9
GTEX-13FHO-1726-SM-5IFGM 9.8
GTEX-ZVE2-1326-SM-5NQ94 9.8
GTEX-S7SF-0926-SM-4AD4M 9.8
GTEX-13G51-0926-SM-5IFFU 9.5
GTEX-QEG4-0726-SM-4R1JL 9.5
GTEX-X62O-2226-SM-46MW3 9.5
GTEX-14AS3-0626-SM-5QGQD 9.4
GTEX-145LV-1326-SM-5S2QI 9.3
GTEX-11EMC-2226-SM-5A5JW 9.3
GTEX-PVOW-1626-SM-48TC9 9.3
GTEX-WK11-1026-SM-4OOS8 9.2
GTEX-UPK5-1226-SM-4IHL8 9.2
GTEX-RNOR-1226-SM-48FDQ 9.2
GTEX-13NZB-1226-SM-5J2MW 9.2
GTEX-X3Y1-1326-SM-4PQZB 9.1
GTEX-XQ3S-1126-SM-4BOPK 9.1
GTEX-T2IS-0826-SM-4DM6L 9.1
GTEX-13O3Q-0826-SM-5IFGF 9.0
GTEX-ZC5H-1326-SM-5HL7E 9.0
GTEX-Y3IK-1126-SM-51MSV 9.0
GTEX-13QJ3-1726-SM-5RQK9 8.9
GTEX-131YS-1426-SM-5IJF7 8.8
GTEX-RN64-1026-SM-48FDX 8.7
GTEX-WQUQ-1626-SM-4OOSH 8.6
GTEX-12ZZY-1426-SM-5N9EI 8.6
GTEX-OXRN-1726-SM-3NM9B 8.5
GTEX-14BIN-2726-SM-5RQIE 8.4
GTEX-11ZTS-2626-SM-5EGIC 8.4
GTEX-12ZZX-1326-SM-5DUWI 8.4
GTEX-YFC4-1226-SM-5LU9R 8.3
GTEX-11DXY-1426-SM-5N9CN 8.1
GTEX-XK95-1026-SM-4GIDV 8.0
GTEX-14A6H-1326-SM-5NQBC 8.0
GTEX-PLZ4-1626-SM-3P618 8.0
GTEX-OXRP-0926-SM-48TC1 7.7
GTEX-ZUA1-1226-SM-5NQ6O 7.6
GTEX-11NUK-1326-SM-5P9GN 7.6
GTEX-WVLH-1426-SM-4MVNX 7.5
GTEX-ZE9C-1126-SM-4WWBD 7.4
GTEX-117YW-1926-SM-5H121 7.3
GTEX-YJ89-1526-SM-5P9IR 7.3
GTEX-RVPV-0526-SM-47JYL 6.8
GTEX-QVUS-0626-SM-447CC 6.6
GTEX-148VJ-1026-SM-5LU98 6.4
GTEX-1399Q-1126-SM-5P9JA 6.4
GTEX-11ONC-1526-SM-5GU6S 6.1
GTEX-R55E-1326-SM-48FCR 5.4
Show all

ESOPHAGUS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

66.2

FANTOM5 sample id

Sample description

Tags Per Million

Esophagus
Tags Per Million: 66.2
FF:10015-101C6 68,74,75 years, mixed 66.2

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