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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:91.2TPM
GTEx:22.8RPKM
FANTOM5:86.1Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Glandular cells

Not detected   Not detected  
   
   
   

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

91.2

overview Male, age 62
Sample 1
TPM: 36.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65
Sample 2
TPM: 61.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65
Sample 3
TPM: 42.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68
Sample 4
TPM: 92.4
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60
Sample 5
TPM: 110.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66
Sample 6
TPM: 76.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63
Sample 7
TPM: 29.3
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66
Sample 8
TPM: 144.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58
Sample 9
TPM: 205.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

22.8

GTEx sample id

RPKM

 

Prostate

Prostate
RPKM: 22.8
Samples: 106

Max RPKM: 119.1
Min RPKM: 3
Std RPKM: 21.1
Median RPKM: 16.4
GTEX-13111-1326-SM-5GCNO 119.1
GTEX-11EQ9-1726-SM-5HL6U 110.8
GTEX-OOBK-2025-SM-3LK5S 85.4
GTEX-12696-2226-SM-5EQ65 82.0
GTEX-131XF-1926-SM-5DUW4 80.7
GTEX-ZVP2-0826-SM-59HJ6 67.7
GTEX-S3XE-1326-SM-4AD4H 67.1
GTEX-12BJ1-1226-SM-5LUAE 61.7
GTEX-ZLFU-1726-SM-4WWBU 53.6
GTEX-14C5O-2826-SM-5RQI6 49.4
GTEX-XPVG-2026-SM-4B65E 48.8
GTEX-WK11-2626-SM-4OOSK 45.3
GTEX-1399R-0526-SM-5IJEF 42.7
GTEX-VJYA-1226-SM-3GIJ6 42.1
GTEX-ZDYS-1226-SM-5IJF3 36.9
GTEX-SNOS-1026-SM-4DM4Y 36.1
GTEX-111YS-1726-SM-5GIED 33.8
GTEX-QV31-1026-SM-4R1K3 31.5
GTEX-13RTJ-2126-SM-5S2PZ 31.2
GTEX-WFG7-1826-SM-3GIL1 30.5
GTEX-11P82-1126-SM-5BC5K 29.6
GTEX-U3ZM-0926-SM-4DXSW 29.5
GTEX-ZT9W-1626-SM-4YCDQ 29.3
GTEX-11ZUS-2126-SM-5N9E6 28.8
GTEX-Y9LG-1826-SM-4VBQC 27.9
GTEX-XMK1-1026-SM-4B65H 26.6
GTEX-PLZ6-1126-SM-3P5ZR 26.5
GTEX-11P7K-0626-SM-5985Z 25.7
GTEX-WH7G-1726-SM-4LVKY 25.4
GTEX-ZPU1-2026-SM-57WFI 23.8
GTEX-OOBJ-2026-SM-3NB1R 23.2
GTEX-XAJ8-0626-SM-47JY4 22.4
GTEX-146FQ-1726-SM-5QGPX 22.3
GTEX-132QS-1126-SM-5P9GC 22.2
GTEX-12C56-1326-SM-5FQSV 21.8
GTEX-11TT1-2026-SM-5EQM8 21.7
GTEX-144GM-0826-SM-5O98R 20.7
GTEX-ZTX8-1026-SM-5EGHD 20.6
GTEX-V955-1826-SM-4JBIL 19.9
GTEX-RM2N-1126-SM-48FCY 19.8
GTEX-1399T-1226-SM-5P9J5 19.1
GTEX-REY6-2126-SM-48FD9 18.2
GTEX-13NYS-1026-SM-5KLZT 18.1
GTEX-14ABY-0726-SM-5Q5DF 18.1
GTEX-U8XE-2526-SM-4E3IT 17.8
GTEX-YF7O-1926-SM-4W1YQ 17.8
GTEX-111FC-2026-SM-5GZYO 17.7
GTEX-111CU-1526-SM-5N9FS 17.6
GTEX-YB5E-1826-SM-5IFI4 17.0
GTEX-14E6E-1126-SM-5S2R4 16.9
GTEX-ZZ64-0926-SM-5E44L 16.9
GTEX-T8EM-1826-SM-4DM7F 16.6
GTEX-SNMC-0926-SM-4DM5U 16.5
GTEX-XQ3S-2526-SM-4BOOG 16.3
GTEX-YJ8A-1126-SM-5IFJU 16.1
GTEX-13FTW-1226-SM-5LZZ1 15.8
GTEX-NPJ8-2426-SM-3MJHL 15.0
GTEX-S95S-1026-SM-4B64M 14.9
GTEX-11WQK-2726-SM-5EQMU 14.3
GTEX-QMRM-1426-SM-4R1K8 14.1
GTEX-117YX-1526-SM-5H12T 14.0
GTEX-S4Q7-1026-SM-4AD75 14.0
GTEX-WFG8-1826-SM-4LVM4 13.8
GTEX-ZY6K-1526-SM-5GZXE 13.4
GTEX-RWSA-2026-SM-47JX8 13.4
GTEX-Q2AI-1126-SM-48U19 13.3
GTEX-U4B1-1426-SM-4DXTX 13.2
GTEX-145LV-1226-SM-5S2QH 13.1
GTEX-OIZH-2026-SM-3NB1M 12.9
GTEX-WFON-1626-SM-4LVMV 12.8
GTEX-X5EB-1826-SM-4E3K8 12.7
GTEX-139T6-1526-SM-5P9G6 12.5
GTEX-U412-2026-SM-4DXSI 12.2
GTEX-Y8E4-2126-SM-5RQHO 12.1
GTEX-NFK9-2226-SM-3MJGP 11.9
GTEX-WOFM-0326-SM-4OOSL 11.5
GTEX-145LT-0626-SM-5O99E 11.5
GTEX-11O72-2726-SM-5HL6K 10.9
GTEX-S33H-1826-SM-4AD65 10.8
GTEX-14BMV-2326-SM-5RQJ4 10.8
GTEX-13O21-1126-SM-5N9EV 10.5
GTEX-13O61-1726-SM-5KM46 10.1
GTEX-XGQ4-1826-SM-4AT6F 9.8
GTEX-13FHO-2826-SM-5K7ZA 9.6
GTEX-XOTO-2826-SM-4B65I 9.1
GTEX-11NSD-0826-SM-5986S 8.9
GTEX-11TUW-2126-SM-5GU7B 8.6
GTEX-SJXC-2026-SM-4DM6N 7.9
GTEX-13FXS-2826-SM-5LZYC 7.8
GTEX-UTHO-2726-SM-4JBH9 7.2
GTEX-QLQ7-1326-SM-4R1JY 7.2
GTEX-WZTO-0926-SM-4PQZ3 7.1
GTEX-13OW8-0426-SM-5J2NR 7.0
GTEX-117YW-1426-SM-5EGGO 6.8
GTEX-11DYG-2526-SM-5N9BB 6.7
GTEX-13N2G-1826-SM-5KM1I 6.5
GTEX-QV44-1526-SM-4R1KI 6.1
GTEX-148VJ-1826-SM-5Q5DV 6.0
GTEX-QEG4-2226-SM-4R1JM 5.9
GTEX-V1D1-1926-SM-4JBGX 5.9
GTEX-12ZZZ-2026-SM-5LZWJ 5.9
GTEX-132NY-2826-SM-5P9G2 5.2
GTEX-ZTTD-2726-SM-57WFA 5.0
GTEX-13G51-2326-SM-5LZXV 4.8
GTEX-11OF3-1726-SM-5GU5Q 4.7
GTEX-ZUA1-2826-SM-59HLE 3.0
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

86.1

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 86.1
FF:10022-101D4 73,79,93 years, male 86.1

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