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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 35.5
Min RPKM: 6.1
Std RPKM: 6.7
Median RPKM: 17.7
GTEX-13OVI-2326-SM-5KM47
35.5
GTEX-XMK1-2626-SM-4B65R
31.0
GTEX-ZXG5-2826-SM-5NQ8T
30.3
GTEX-Y3I4-1926-SM-4TT8L
28.1
GTEX-ZA64-1726-SM-5CVMF
27.9
GTEX-145ME-1626-SM-5RQI3
26.7
GTEX-13111-2326-SM-5LZUQ
25.6
GTEX-WFJO-2026-SM-4LVM3
24.6
GTEX-YF7O-2226-SM-5CVN8
24.5
GTEX-13QJC-2326-SM-5Q5CD
24.0
GTEX-ZQG8-2126-SM-4YCF1
23.8
GTEX-11P81-2026-SM-5P9GT
23.6
GTEX-XV7Q-2426-SM-4BRV8
23.4
GTEX-YB5K-1726-SM-5IFIZ
23.3
GTEX-11WQK-2926-SM-5EQKT
23.1
GTEX-X5EB-1726-SM-4E3J7
22.2
GTEX-1339X-2326-SM-5HL5B
21.9
GTEX-13O21-1926-SM-5MR39
21.1
GTEX-111FC-2926-SM-5GZY7
20.4
GTEX-1117F-3026-SM-5GZYU
19.9
GTEX-13113-1526-SM-5EGHV
19.2
GTEX-12WSL-2126-SM-5GCNG
19.1
GTEX-Y5V6-2226-SM-4VDTC
19.0
GTEX-X261-2426-SM-4PQZU
18.2
GTEX-146FR-1226-SM-5SIA7
18.1
GTEX-WOFM-2126-SM-4OOSR
18.0
GTEX-X15G-2126-SM-4PQZR
17.9
GTEX-11P82-0926-SM-5986X
17.9
GTEX-Y111-2626-SM-4TT24
17.7
GTEX-WYVS-2026-SM-4RGNS
17.6
GTEX-11ZTT-2226-SM-5CVLP
16.9
GTEX-11TUW-2426-SM-5EQKB
16.9
GTEX-ZP4G-1926-SM-57WDZ
16.7
GTEX-1314G-2026-SM-5LZUM
16.2
GTEX-1445S-2926-SM-5O993
16.1
GTEX-13G51-2426-SM-5LZY8
15.8
GTEX-11EQ9-2026-SM-5P9JI
15.1
GTEX-12WSN-2226-SM-5DUXT
15.1
GTEX-XGQ4-2626-SM-4AT6B
14.9
GTEX-11NV4-1926-SM-5N9D4
13.4
GTEX-11ZTS-3026-SM-5EQM7
13.2
GTEX-ZPU1-2326-SM-57WEP
12.3
GTEX-12WSM-1826-SM-5BC64
12.1
GTEX-ZT9W-2126-SM-51MSF
11.4
GTEX-14B4R-1426-SM-5Q5CG
11.4
GTEX-13JVG-2926-SM-5J2N9
11.1
GTEX-131XF-2826-SM-5EGKH
10.6
GTEX-X3Y1-1926-SM-4PQZO
10.6
GTEX-Y5LM-1826-SM-4VDT9
9.4
GTEX-ZE7O-2926-SM-51MSG
8.9
GTEX-13NYB-2426-SM-5IFF4
8.8
GTEX-13CF2-2426-SM-5LZYL
8.7
GTEX-13OVL-2926-SM-5IFG3
8.1
GTEX-ZQUD-2126-SM-51MSY
7.6
GTEX-13VXT-1726-SM-5IFF5
6.5
GTEX-ZC5H-2726-SM-5KLZW
6.2
GTEX-13NYC-2626-SM-5K7VN
6.1
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.