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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:47.6TPM
GTEx:26.5RPKM
FANTOM5:110.3Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Glandular cells

Medium   Medium  
   
   

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

47.6

overview Male, age 65
Sample 1
TPM: 42.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 49.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 46.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 51.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.5

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 26.5
Samples: 88

Max RPKM: 77.9
Min RPKM: 13.2
Std RPKM: 14.7
Median RPKM: 21.7
GTEX-ZQUD-0926-SM-57WE3 77.9
GTEX-WEY5-1526-SM-4LMJF 77.7
GTEX-111CU-1326-SM-5NQ8L 74.8
GTEX-ZF2S-1726-SM-57WFT 74.0
GTEX-XMK1-1826-SM-4B66F 66.1
GTEX-WFG7-1726-SM-4LVME 58.7
GTEX-117YX-0326-SM-5GICL 56.8
GTEX-12WSK-1526-SM-5CVNO 54.1
GTEX-13OVI-1926-SM-5IJCG 50.0
GTEX-13111-1426-SM-5DUW3 47.8
GTEX-Y3IK-1726-SM-4YCCR 43.4
GTEX-ZQG8-2526-SM-57WEQ 40.2
GTEX-Y114-1426-SM-4TT6W 35.5
GTEX-1192X-2526-SM-59868 34.9
GTEX-ZPIC-2326-SM-57WDW 34.4
GTEX-145ME-0926-SM-5O9AR 31.1
GTEX-ZVT2-2126-SM-5NQ93 27.3
GTEX-ZTSS-0926-SM-59865 26.4
GTEX-13RTK-0826-SM-5Q5C6 26.2
GTEX-ZC5H-2326-SM-4WAYT 26.2
GTEX-13QBU-1926-SM-5IJEW 25.7
GTEX-13O21-1026-SM-5IJDU 25.7
GTEX-13FTW-2026-SM-5IJE2 25.1
GTEX-X15G-1426-SM-4PQZK 24.6
GTEX-ZP4G-1626-SM-57WGD 24.3
GTEX-XAJ8-0526-SM-47JYK 24.3
GTEX-ZVP2-1726-SM-5GU5P 24.2
GTEX-13O61-1326-SM-5KM31 23.5
GTEX-ZLFU-1526-SM-4WWBT 23.5
GTEX-11VI4-1626-SM-5EQKO 23.3
GTEX-WFG8-1626-SM-4LVMB 23.3
GTEX-WRHK-1026-SM-4MVOD 23.2
GTEX-11EQ9-1326-SM-5985X 23.2
GTEX-1122O-1326-SM-5H11F 23.1
GTEX-131XG-1726-SM-5LZUR 23.1
GTEX-11NSD-1726-SM-5N9C3 23.0
GTEX-WFJO-0926-SM-4LVM2 22.8
GTEX-13D11-0726-SM-5LZZB 22.8
GTEX-11XUK-1426-SM-5EQMG 22.4
GTEX-ZTPG-2626-SM-57WFX 22.2
GTEX-1399U-2126-SM-5IFEZ 21.9
GTEX-139YR-2226-SM-5IFFW 21.9
GTEX-ZTX8-0526-SM-59HLD 21.8
GTEX-13FH7-1226-SM-5IJFK 21.7
GTEX-11P82-0826-SM-5P9GU 21.7
GTEX-1399S-2026-SM-5KM4B 21.2
GTEX-ZPCL-1726-SM-57WEO 21.1
GTEX-YB5E-1526-SM-5IFIE 21.1
GTEX-139T6-1026-SM-5IJGC 21.0
GTEX-11P7K-1626-SM-5GU63 20.8
GTEX-11DXX-1626-SM-5H11H 20.8
GTEX-Z9EW-0926-SM-5CVMM 20.6
GTEX-XGQ4-1326-SM-4GIDU 20.6
GTEX-14E6E-1626-SM-5RQI7 20.6
GTEX-145LT-1026-SM-5LU9O 20.5
GTEX-WH7G-1626-SM-4LVMY 20.4
GTEX-ZLV1-1126-SM-4WWBW 20.3
GTEX-XBED-1426-SM-4AT4G 19.9
GTEX-Y9LG-1626-SM-5IFHM 19.7
GTEX-ZYWO-1526-SM-5SIAL 19.6
GTEX-13PL7-2626-SM-5IFH4 19.4
GTEX-ZEX8-1826-SM-57WBH 19.3
GTEX-ZVZP-1826-SM-5GZXB 19.2
GTEX-UPK5-2026-SM-4JBIM 19.1
GTEX-ZZ64-0526-SM-5GZXM 19.1
GTEX-131XF-1326-SM-5GCMQ 19.1
GTEX-12BJ1-1926-SM-5HL9Z 19.1
GTEX-YEC4-1726-SM-4W21E 19.0
GTEX-14DAR-1426-SM-5RQIR 19.0
GTEX-ZXES-1526-SM-5NQ95 18.4
GTEX-148VJ-2226-SM-5NQ9M 18.1
GTEX-11I78-1126-SM-5A5K5 17.8
GTEX-13113-1226-SM-5EGHT 17.6
GTEX-XUZC-1426-SM-4BRV3 17.2
GTEX-VJYA-0926-SM-4KL1N 17.1
GTEX-111YS-1426-SM-5GID8 17.1
GTEX-ZYFG-2026-SM-5E43Y 17.1
GTEX-Y5LM-1626-SM-4VDTB 17.0
GTEX-11DXZ-1326-SM-5H11X 16.7
GTEX-VUSG-1726-SM-4KKZL 16.3
GTEX-1399R-2026-SM-5K7WN 16.3
GTEX-13CF3-1226-SM-5LZXN 15.4
GTEX-133LE-1426-SM-5IFH1 15.4
GTEX-XXEK-1026-SM-4BRUW 15.3
GTEX-YF7O-1826-SM-5IFIU 14.9
GTEX-ZA64-1226-SM-5HL7B 14.6
GTEX-WQUQ-2426-SM-4MVNW 14.3
GTEX-X5EB-1626-SM-4E3IV 13.2
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

110.3

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 110.3
FF:10024-101D6 15,40,85 years, mixed 110.3

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