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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 77.9
Min RPKM: 13.2
Std RPKM: 14.7
Median RPKM: 21.7
GTEX-ZQUD-0926-SM-57WE3
77.9
GTEX-WEY5-1526-SM-4LMJF
77.7
GTEX-111CU-1326-SM-5NQ8L
74.8
GTEX-ZF2S-1726-SM-57WFT
74.0
GTEX-XMK1-1826-SM-4B66F
66.1
GTEX-WFG7-1726-SM-4LVME
58.7
GTEX-117YX-0326-SM-5GICL
56.8
GTEX-12WSK-1526-SM-5CVNO
54.1
GTEX-13OVI-1926-SM-5IJCG
50.0
GTEX-13111-1426-SM-5DUW3
47.8
GTEX-Y3IK-1726-SM-4YCCR
43.4
GTEX-ZQG8-2526-SM-57WEQ
40.2
GTEX-Y114-1426-SM-4TT6W
35.5
GTEX-1192X-2526-SM-59868
34.9
GTEX-ZPIC-2326-SM-57WDW
34.4
GTEX-145ME-0926-SM-5O9AR
31.1
GTEX-ZVT2-2126-SM-5NQ93
27.3
GTEX-ZTSS-0926-SM-59865
26.4
GTEX-13RTK-0826-SM-5Q5C6
26.2
GTEX-ZC5H-2326-SM-4WAYT
26.2
GTEX-13QBU-1926-SM-5IJEW
25.7
GTEX-13O21-1026-SM-5IJDU
25.7
GTEX-13FTW-2026-SM-5IJE2
25.1
GTEX-X15G-1426-SM-4PQZK
24.6
GTEX-ZP4G-1626-SM-57WGD
24.3
GTEX-XAJ8-0526-SM-47JYK
24.3
GTEX-ZVP2-1726-SM-5GU5P
24.2
GTEX-13O61-1326-SM-5KM31
23.5
GTEX-ZLFU-1526-SM-4WWBT
23.5
GTEX-11VI4-1626-SM-5EQKO
23.3
GTEX-WFG8-1626-SM-4LVMB
23.3
GTEX-WRHK-1026-SM-4MVOD
23.2
GTEX-11EQ9-1326-SM-5985X
23.2
GTEX-1122O-1326-SM-5H11F
23.1
GTEX-131XG-1726-SM-5LZUR
23.1
GTEX-11NSD-1726-SM-5N9C3
23.0
GTEX-WFJO-0926-SM-4LVM2
22.8
GTEX-13D11-0726-SM-5LZZB
22.8
GTEX-11XUK-1426-SM-5EQMG
22.4
GTEX-ZTPG-2626-SM-57WFX
22.2
GTEX-1399U-2126-SM-5IFEZ
21.9
GTEX-139YR-2226-SM-5IFFW
21.9
GTEX-ZTX8-0526-SM-59HLD
21.8
GTEX-13FH7-1226-SM-5IJFK
21.7
GTEX-11P82-0826-SM-5P9GU
21.7
GTEX-1399S-2026-SM-5KM4B
21.2
GTEX-ZPCL-1726-SM-57WEO
21.1
GTEX-YB5E-1526-SM-5IFIE
21.1
GTEX-139T6-1026-SM-5IJGC
21.0
GTEX-11P7K-1626-SM-5GU63
20.8
GTEX-11DXX-1626-SM-5H11H
20.8
GTEX-Z9EW-0926-SM-5CVMM
20.6
GTEX-XGQ4-1326-SM-4GIDU
20.6
GTEX-14E6E-1626-SM-5RQI7
20.6
GTEX-145LT-1026-SM-5LU9O
20.5
GTEX-WH7G-1626-SM-4LVMY
20.4
GTEX-ZLV1-1126-SM-4WWBW
20.3
GTEX-XBED-1426-SM-4AT4G
19.9
GTEX-Y9LG-1626-SM-5IFHM
19.7
GTEX-ZYWO-1526-SM-5SIAL
19.6
GTEX-13PL7-2626-SM-5IFH4
19.4
GTEX-ZEX8-1826-SM-57WBH
19.3
GTEX-ZVZP-1826-SM-5GZXB
19.2
GTEX-UPK5-2026-SM-4JBIM
19.1
GTEX-ZZ64-0526-SM-5GZXM
19.1
GTEX-131XF-1326-SM-5GCMQ
19.1
GTEX-12BJ1-1926-SM-5HL9Z
19.1
GTEX-YEC4-1726-SM-4W21E
19.0
GTEX-14DAR-1426-SM-5RQIR
19.0
GTEX-ZXES-1526-SM-5NQ95
18.4
GTEX-148VJ-2226-SM-5NQ9M
18.1
GTEX-11I78-1126-SM-5A5K5
17.8
GTEX-13113-1226-SM-5EGHT
17.6
GTEX-XUZC-1426-SM-4BRV3
17.2
GTEX-VJYA-0926-SM-4KL1N
17.1
GTEX-111YS-1426-SM-5GID8
17.1
GTEX-ZYFG-2026-SM-5E43Y
17.1
GTEX-Y5LM-1626-SM-4VDTB
17.0
GTEX-11DXZ-1326-SM-5H11X
16.7
GTEX-VUSG-1726-SM-4KKZL
16.3
GTEX-1399R-2026-SM-5K7WN
16.3
GTEX-13CF3-1226-SM-5LZXN
15.4
GTEX-133LE-1426-SM-5IFH1
15.4
GTEX-XXEK-1026-SM-4BRUW
15.3
GTEX-YF7O-1826-SM-5IFIU
14.9
GTEX-ZA64-1226-SM-5HL7B
14.6
GTEX-WQUQ-2426-SM-4MVNW
14.3
GTEX-X5EB-1626-SM-4E3IV
13.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.