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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:43.5TPM
GTEx:27.5RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Glandular cells

Medium   Medium  
   
   
   

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Glandular cells

Medium   Medium  
   
   
   

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

43.5

overview Female, age 33
Sample 1
TPM: 28.9
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82
Sample 2
TPM: 50.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71
Sample 3
TPM: 55.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66
Sample 4
TPM: 39.0
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

27.5

GTEx sample id

RPKM

 

Stomach

Stomach
RPKM: 27.5
Samples: 193

Max RPKM: 109.9
Min RPKM: 5.1
Std RPKM: 18.8
Median RPKM: 20.2
GTEX-ZV6S-0926-SM-57WGB 109.9
GTEX-WH7G-1526-SM-4LVMX 100.5
GTEX-R55C-1026-SM-48FCM 96.9
GTEX-TKQ1-0526-SM-4DXTG 89.2
GTEX-13X6H-1626-SM-5Q5CT 85.8
GTEX-12C56-0526-SM-5FQST 74.4
GTEX-S7SF-0626-SM-4AD4V 73.8
GTEX-13OVI-2426-SM-5KM4J 72.4
GTEX-Y114-1226-SM-4TT88 68.3
GTEX-U8T8-1226-SM-4E3IH 66.5
GTEX-13O61-1126-SM-5L3FI 66.2
GTEX-P4PQ-1526-SM-3NMCK 66.1
GTEX-PLZ6-0826-SM-3P61K 62.7
GTEX-XPVG-1526-SM-4B66C 62.5
GTEX-OIZH-1526-SM-3NB1J 61.0
GTEX-S4P3-0726-SM-4AD57 59.6
GTEX-1339X-1426-SM-5K7YO 55.8
GTEX-12WSJ-0926-SM-5P9JD 55.4
GTEX-13N1W-2026-SM-5K7YU 55.3
GTEX-1399U-1626-SM-5P9J3 54.4
GTEX-P4QT-1526-SM-3NMCT 54.1
GTEX-R55G-1126-SM-48FDG 53.7
GTEX-1211K-1426-SM-5FQTF 53.0
GTEX-11WQK-2626-SM-5EQ4K 51.9
GTEX-WFJO-1126-SM-4LVLZ 49.8
GTEX-TKQ2-0926-SM-4DXU5 48.7
GTEX-11EQ9-1226-SM-5987E 46.7
GTEX-S4Z8-1226-SM-4AD6W 45.9
GTEX-11P7K-1726-SM-5GU6F 45.6
GTEX-146FH-2126-SM-5SI9U 45.4
GTEX-SIU7-1426-SM-4BRWT 45.3
GTEX-117YW-2226-SM-5N9DB 44.7
GTEX-ZTX8-0426-SM-59HLG 44.1
GTEX-ZZPU-1426-SM-5GZZ6 43.4
GTEX-YEC3-1426-101806-SM-5PNXX 42.4
GTEX-UJHI-1026-SM-4IHJP 42.3
GTEX-QXCU-1926-SM-48FE4 40.8
GTEX-RU1J-0526-SM-46MUT 40.7
GTEX-T5JC-1926-SM-4DM6Q 37.4
GTEX-11P82-0726-SM-5PNYL 37.1
GTEX-XBEW-1826-SM-4RTWX 36.9
GTEX-XAJ8-0326-SM-47JYI 36.7
GTEX-13111-1226-SM-5GCNC 35.7
GTEX-131XE-2226-SM-5PNYX 35.7
GTEX-YJ8A-1526-SM-5P9FT 35.1
GTEX-NFK9-1526-SM-3LK7B 35.0
GTEX-WEY5-1226-SM-4LMIQ 33.8
GTEX-SNOS-0826-SM-4DM5N 33.2
GTEX-11TT1-0726-SM-5GU5A 33.0
GTEX-T8EM-1226-SM-4DM5J 32.7
GTEX-ZPIC-2026-SM-57WG3 32.3
GTEX-13O3Q-2126-SM-5KM4C 32.1
GTEX-11NUK-2426-SM-5BC4U 31.2
GTEX-11VI4-0326-SM-5EQ6L 30.5
GTEX-UPIC-1826-SM-4IHKC 30.4
GTEX-ZVT3-2126-SM-59HL2 29.0
GTEX-132AR-2426-SM-5IFFD 28.7
GTEX-12WSD-2326-SM-59HKQ 28.7
GTEX-13RTK-0226-SM-5RQHR 28.7
GTEX-RTLS-2626-SM-46MUJ 28.5
GTEX-145MO-2226-SM-5Q5BN 28.2
GTEX-WHPG-0426-SM-4M1XW 27.2
GTEX-13S7M-1826-SM-5RQK6 27.0
GTEX-13QBU-1126-SM-5LU44 26.8
GTEX-ZYVF-2726-SM-5GID4 26.7
GTEX-Q2AH-1126-SM-48TZM 26.4
GTEX-133LE-1326-SM-5IFGO 25.0
GTEX-PWCY-0926-SM-48TD7 24.8
GTEX-11EM3-1026-SM-5A5KL 24.6
GTEX-Y9LG-1026-SM-5IFJN 24.4
GTEX-U4B1-1026-SM-4DXT1 24.4
GTEX-ZYY3-1726-SM-5EGH3 24.3
GTEX-131XF-1226-SM-5HL8V 24.2
GTEX-131XG-1226-SM-5EGH9 24.1
GTEX-13FH7-1026-SM-5IJGF 23.9
GTEX-Y5LM-1326-SM-5RQIS 23.5
GTEX-12WSK-1426-SM-5CVNN 23.5
GTEX-T6MO-0726-SM-4DM58 23.1
GTEX-117YX-1026-SM-5H11V 23.0
GTEX-QCQG-0526-SM-48U2A 23.0
GTEX-WRHK-0626-SM-4MVOE 23.0
GTEX-S4Q7-0726-SM-4AD5F 22.6
GTEX-11I78-1726-SM-5A5M3 22.5
GTEX-R55D-1526-SM-48FEJ 22.5
GTEX-111YS-1126-SM-5GZYQ 22.4
GTEX-ZQUD-0826-SM-57WDQ 22.1
GTEX-WZTO-2126-SM-4PQYW 22.1
GTEX-146FR-2026-SM-5NQAI 21.8
GTEX-11GSP-2126-SM-5HL5E 21.6
GTEX-Y3I4-1626-SM-4TT7W 21.3
GTEX-ZVZP-1726-SM-5GZWY 21.2
GTEX-QMRM-1126-SM-447BN 21.2
GTEX-12BJ1-1726-SM-5HL9B 20.8
GTEX-TMMY-1626-SM-4DXTY 20.8
GTEX-RM2N-0826-SM-48FD3 20.5
GTEX-ZLV1-0826-SM-4WWEQ 20.4
GTEX-O5YW-1526-SM-3MJGL 20.2
GTEX-145ME-1026-SM-5O9B4 20.1
GTEX-SNMC-0626-SM-4DM6H 20.0
GTEX-YFCO-0826-SM-5LUAG 19.7
GTEX-13FTW-1726-SM-5KM2B 19.6
GTEX-ZZ64-0426-SM-5E43F 19.6
GTEX-S341-0626-SM-4AD5T 19.5
GTEX-13OW6-2526-SM-5IJEC 19.3
GTEX-SUCS-0926-SM-4DM4Z 19.3
GTEX-P4PP-1526-SM-3P61M 19.1
GTEX-S4UY-1626-SM-4AD55 19.0
GTEX-XV7Q-1326-SM-4BRWM 18.9
GTEX-132QS-1826-SM-5IFFN 18.9
GTEX-145LT-1426-SM-5O9B3 18.9
GTEX-QDVN-1226-SM-48TZ5 18.7
GTEX-13QJ3-2726-SM-5SI6L 18.7
GTEX-OHPK-1526-SM-3MJGM 18.6
GTEX-139YR-1926-SM-5LZXM 18.6
GTEX-POMQ-0826-SM-3P61H 18.6
GTEX-ZP4G-1226-SM-4WWCJ 18.4
GTEX-11DXX-1326-SM-5GIDZ 18.2
GTEX-QDVJ-1426-SM-48U1Y 18.2
GTEX-WFG7-1326-SM-4LMK1 18.2
GTEX-13113-0726-SM-5LZUF 18.1
GTEX-14BMU-1126-SM-5RQJ8 18.1
GTEX-ZVP2-1626-SM-5GU5D 18.0
GTEX-ZXES-1426-SM-5NQ8S 17.9
GTEX-ZY6K-0726-SM-5A5L8 17.9
GTEX-Y8E4-1526-SM-4WWDI 17.8
GTEX-139D8-2326-SM-5IFGE 17.6
GTEX-13PVQ-2126-SM-5L3FW 17.4
GTEX-ZYFG-1326-SM-5GICJ 17.4
GTEX-144GM-1726-SM-5O9AS 17.3
GTEX-R53T-1226-SM-48FCT 17.2
GTEX-QV31-0626-SM-447C5 17.0
GTEX-ZLFU-1326-SM-4WWET 17.0
GTEX-PWOO-1226-SM-48TCO 16.9
GTEX-QLQ7-0826-SM-447B3 16.5
GTEX-ZVT2-1626-SM-51MRC 16.2
GTEX-145MN-1326-SM-5NQ9S 16.1
GTEX-ZA64-0826-SM-5HL9U 16.1
GTEX-Y3IK-1426-SM-4YCES 16.1
GTEX-V1D1-1726-SM-4JBHB 16.0
GTEX-WFG8-1326-SM-4LVN3 15.8
GTEX-XUJ4-1226-SM-4BOPD 15.7
GTEX-YEC4-1426-SM-5IFHS 15.7
GTEX-PWN1-1526-SM-48TDA 15.6
GTEX-13CF3-1926-SM-5K7WF 15.6
GTEX-1122O-1926-SM-5EGIQ 15.6
GTEX-13D11-2126-SM-5IFH2 15.6
GTEX-111CU-0926-SM-5EGIK 15.5
GTEX-OOBJ-1526-SM-3NB1Q 15.4
GTEX-U3ZN-2026-SM-4DXUC 15.4
GTEX-13FTX-0726-SM-5N9BI 14.9
GTEX-VJYA-1026-SM-4KL21 14.8
GTEX-1399S-1626-SM-5P9GI 14.7
GTEX-S3XE-1026-SM-4AD4O 14.5
GTEX-T5JW-0926-SM-4DM5K 14.5
GTEX-Q2AI-0826-SM-48TZO 14.4
GTEX-S95S-0826-SM-4B64N 14.4
GTEX-XXEK-0826-SM-4BRWG 14.0
GTEX-UPK5-2126-SM-4JBJK 13.9
GTEX-OXRK-1626-SM-3NB17 13.8
GTEX-13U4I-2526-SM-5SI8Z 13.6
GTEX-WHWD-1426-SM-4OORU 13.5
GTEX-ZF2S-1426-SM-57WET 13.3
GTEX-13O21-0926-SM-5IFGT 13.3
GTEX-1399R-1126-SM-5IFIO 13.2
GTEX-V955-1326-SM-4JBHR 13.1
GTEX-P78B-1826-SM-3P5YX 13.1
GTEX-144GN-1226-SM-5O991 12.9
GTEX-XQ8I-2026-SM-4BOOL 12.5
GTEX-XUZC-0726-SM-4BOPH 12.4
GTEX-ZV7C-1626-SM-5NQ7E 12.4
GTEX-QLQW-0726-SM-447AA 12.4
GTEX-Q734-1026-SM-48U16 12.3
GTEX-UJMC-1226-SM-4IHLI 12.3
GTEX-14BMV-2226-SM-5RQHX 12.2
GTEX-WFON-1126-SM-4LVMA 12.1
GTEX-XBED-1226-SM-4AT5V 12.0
GTEX-Y5V6-1326-SM-4VDTF 11.8
GTEX-11EI6-2426-SM-5PNVS 11.6
GTEX-PW2O-1226-SM-48TCH 11.5
GTEX-ZDYS-1926-SM-5HL59 11.3
GTEX-11NSD-1426-SM-5HL67 11.1
GTEX-RWS6-0926-SM-47JXE 11.0
GTEX-ZT9W-1526-SM-4YCDE 10.9
GTEX-W5WG-1726-SM-4LMI5 10.5
GTEX-Y8LW-0826-SM-4WWDO 10.5
GTEX-ZPU1-1626-SM-4WWB2 10.4
GTEX-PX3G-1526-SM-48U11 10.3
GTEX-QV44-1226-SM-4R1KE 9.8
GTEX-ZE7O-3026-SM-51MS4 9.6
GTEX-12696-1726-SM-5EQLH 8.8
GTEX-X15G-1126-SM-4PQZG 8.5
GTEX-ZAB4-1526-SM-5CVN7 7.9
GTEX-12WSG-2026-SM-5FQUU 5.1
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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