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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:61.8TPM
GTEx:24.3RPKM
FANTOM5:96.5Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Cells in seminiferous ducts

Medium   Medium  

Leydig cells

Low   Medium  
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

61.8

overview Male, age 56
Sample 1
TPM: 47.3
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 67.4
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 54.0
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 55.7
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 55.9
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 78.1
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 56.9
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 86.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 56.0
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 61.0
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

24.3

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 24.3
Samples: 172

Max RPKM: 39.7
Min RPKM: 9.3
Std RPKM: 5.9
Median RPKM: 23.9
GTEX-11WQC-2326-SM-5EQKE 39.7
GTEX-ZYT6-2726-SM-5GICP 36.7
GTEX-11ZUS-2726-SM-5FQUA 36.4
GTEX-117YW-1526-SM-5EGGP 36.3
GTEX-Z93S-1726-SM-5HL8G 35.9
GTEX-T6MN-2026-SM-4DM7L 34.9
GTEX-11DXZ-2126-SM-59881 34.3
GTEX-QEG5-0126-SM-4R1JR 33.9
GTEX-131XE-0426-SM-5IJF4 33.9
GTEX-S4Q7-1226-SM-4AD5I 33.9
GTEX-ZAB5-2426-SM-5CVMW 33.3
GTEX-11GS4-2026-SM-5N9CP 32.9
GTEX-OXRL-2126-SM-3NM98 32.7
GTEX-U8T8-1126-SM-4DXUE 32.7
GTEX-11O72-0726-SM-5P9GO 32.7
GTEX-11NV4-1726-SM-5N9FC 32.6
GTEX-QEG4-0126-SM-48TZE 32.6
GTEX-ZTSS-1526-SM-51MTC 32.6
GTEX-13N1W-2626-SM-5IJEP 32.2
GTEX-OHPM-2126-SM-3LK75 32.0
GTEX-YEC3-1726-SM-5IFIK 31.7
GTEX-XAJ8-1326-SM-47JYT 31.6
GTEX-12WSH-0326-SM-5GCNH 31.5
GTEX-13OVL-0426-SM-5IFG6 31.4
GTEX-WK11-0326-SM-4OOS6 30.9
GTEX-14ABY-0626-SM-5Q5C9 30.8
GTEX-12696-0226-SM-5EGL3 30.8
GTEX-ZVTK-0126-SM-57WDG 30.8
GTEX-TKQ2-1526-SM-4DXUN 30.7
GTEX-139TS-1726-SM-5IJG5 30.6
GTEX-ZQUD-2026-SM-51MSM 30.3
GTEX-REY6-0126-SM-48FDT 30.2
GTEX-11EI6-2226-SM-5EGJM 30.2
GTEX-PW2O-1426-SM-48TCD 29.9
GTEX-117XS-2026-SM-5GID1 29.8
GTEX-13OW5-2526-SM-5L3I1 29.5
GTEX-S7PM-0626-SM-4AD4Q 29.4
GTEX-1399Q-2826-SM-5IJEZ 29.3
GTEX-U4B1-1526-SM-4DXSL 29.3
GTEX-Y111-2426-SM-4TT23 29.1
GTEX-12WSL-2326-SM-5DUXQ 29.1
GTEX-11EQ9-1926-SM-5PNVV 29.0
GTEX-ZVZP-2226-SM-57WBF 28.9
GTEX-Q2AI-1226-SM-48U14 28.9
GTEX-139TT-2226-SM-5LZWO 28.8
GTEX-N7MS-0126-SM-3TW8O 28.8
GTEX-13112-0226-SM-5P9IV 28.7
GTEX-OOBK-2126-SM-3LK5T 28.6
GTEX-13FLW-2126-SM-5N9FD 28.5
GTEX-13VXU-0726-SM-5J2O7 28.5
GTEX-11OF3-1826-SM-5987N 28.3
GTEX-SNOS-1126-SM-4DM67 27.9
GTEX-145MO-0126-SM-5S2QU 27.9
GTEX-12ZZY-0126-SM-5LZV2 27.6
GTEX-XLM4-1526-SM-4AT6D 27.4
GTEX-13FHP-2826-SM-5IJFW 27.2
GTEX-111CU-1726-SM-5EGHM 26.9
GTEX-13NZB-2026-SM-5MR4M 26.5
GTEX-T5JC-0726-SM-4DM55 26.4
GTEX-R55E-0726-SM-48FCZ 26.3
GTEX-UPJH-0126-SM-4IHLL 26.2
GTEX-144GM-0426-SM-5Q5C8 26.1
GTEX-S7SE-0326-SM-4AT5Q 25.9
GTEX-V955-1926-SM-4KL1L 25.9
GTEX-OIZH-2126-SM-3NB1P 25.8
GTEX-XBEC-0126-SM-4GIDT 25.5
GTEX-ZV7C-2026-SM-5NQ8F 25.4
GTEX-144GL-0726-SM-5LU4P 25.3
GTEX-1212Z-0326-SM-5FQSJ 25.3
GTEX-13111-1526-SM-5EGJX 25.2
GTEX-11P82-1526-SM-5BC5M 25.0
GTEX-U8XE-0126-SM-4E3I3 24.8
GTEX-XQ3S-2726-SM-4BOP2 24.7
GTEX-XGQ4-2026-SM-4AT6G 24.6
GTEX-13NZA-2526-SM-5IJFX 24.5
GTEX-X5EB-2026-SM-4E3KA 24.5
GTEX-11NUK-2626-SM-5A5MB 24.5
GTEX-X3Y1-2626-SM-4PQZI 24.4
GTEX-111FC-1926-SM-5GZYC 24.4
GTEX-WH7G-1926-SM-4LVMM 24.3
GTEX-139T6-1226-SM-5IFFC 24.2
GTEX-QV31-1126-SM-4R1K4 24.2
GTEX-WOFM-1126-SM-4OOSB 24.1
GTEX-R55C-1426-SM-48FED 24.0
GTEX-ZYFC-0126-SM-5GIEH 24.0
GTEX-ZPU1-2126-SM-57WED 24.0
GTEX-V1D1-2126-SM-4JBH4 23.9
GTEX-12C56-1426-SM-5FQSW 23.8
GTEX-XMK1-2026-SM-4B65K 23.8
GTEX-111YS-2026-SM-5EGGL 23.6
GTEX-TKQ1-0926-SM-4DXU2 23.6
GTEX-ZUA1-2726-SM-59HLJ 23.6
GTEX-13O1R-0726-SM-5IJEI 23.5
GTEX-ZT9W-2226-SM-57WFU 23.5
GTEX-12WSI-2126-SM-5GCMV 23.4
GTEX-11LCK-2326-SM-5HL53 23.4
GTEX-SUCS-1326-SM-4DM5T 23.1
GTEX-WFG8-1926-SM-4LVM1 23.0
GTEX-132QS-1226-SM-5P9GD 23.0
GTEX-1339X-1926-SM-5PNVP 23.0
GTEX-11NSD-1026-SM-5N9BE 23.0
GTEX-S95S-1126-SM-4B64E 22.9
GTEX-YEC4-1526-SM-4W1YU 22.7
GTEX-YF7O-2026-SM-4W1YE 22.7
GTEX-WZTO-0326-SM-4PQYZ 22.6
GTEX-T8EM-0126-SM-4DM5R 22.5
GTEX-WHSB-2126-SM-4M1XF 22.5
GTEX-OOBJ-2126-SM-3NB1N 22.5
GTEX-13NYB-2226-SM-5MR58 22.4
GTEX-Y5V6-1726-SM-4VDSZ 22.4
GTEX-147JS-0126-SM-5S2TW 22.2
GTEX-R55D-0126-SM-48FEL 22.2
GTEX-11WQK-2826-SM-5EQKH 22.2
GTEX-11EQ8-1426-SM-5EGJR 21.9
GTEX-11TUW-2226-SM-5EQL9 21.9
GTEX-RUSQ-2126-SM-47JXK 21.9
GTEX-P4QR-0226-SM-3NMCH 21.9
GTEX-ZZ64-1126-SM-5GZXY 21.7
GTEX-14753-0626-SM-5Q5CY 21.7
GTEX-13N2G-0126-SM-5N9DV 21.6
GTEX-ZA64-1626-SM-5CVME 21.6
GTEX-WVLH-2626-SM-4MVNV 21.6
GTEX-ZDYS-1326-SM-5IJFF 21.5
GTEX-Q2AH-1526-SM-48TZG 21.5
GTEX-U3ZM-1626-SM-4DXSK 21.5
GTEX-S3XE-1526-SM-4AD5A 21.4
GTEX-YB5E-1926-SM-5IFIG 21.3
GTEX-RWSA-2426-SM-47JXR 21.2
GTEX-VJYA-1426-SM-4KL1Y 21.2
GTEX-13FTW-1326-SM-5LZZD 20.9
GTEX-145MH-2326-SM-5O9AW 20.8
GTEX-P4QS-2126-SM-3NMCF 20.7
GTEX-144GN-1626-SM-5Q5BU 20.3
GTEX-12WSM-1326-SM-5GCP9 20.2
GTEX-O5YT-2126-SM-3MJGD 20.1
GTEX-SNMC-1026-SM-4DM7K 20.0
GTEX-X261-2326-SM-4PQYU 19.9
GTEX-YFCO-1726-SM-4W21S 19.9
GTEX-YJ89-0626-SM-4TT3Z 19.3
GTEX-PLZ5-1526-SM-3P5ZX 19.2
GTEX-13O61-2026-SM-5J2M6 19.0
GTEX-ZT9X-1426-SM-5DUX1 18.8
GTEX-NFK9-0126-SM-3LK5H 18.8
GTEX-OIZI-0126-SM-3NB13 18.6
GTEX-13O21-1226-SM-5J2MK 18.6
GTEX-1399R-1626-SM-5P9GG 18.4
GTEX-WFON-2026-SM-4LVMW 18.3
GTEX-QLQ7-1426-SM-4R1JX 18.3
GTEX-145LT-0426-SM-5LUAP 18.0
GTEX-11TT1-2226-SM-5GU6B 18.0
GTEX-XBED-2026-SM-4AT5D 17.9
GTEX-111VG-1926-SM-5GIDO 17.7
GTEX-QMRM-1526-SM-4R1K6 17.6
GTEX-QLQW-1026-SM-447A9 17.0
GTEX-13OW6-0126-SM-5IJGM 16.9
GTEX-S33H-0126-SM-4AD62 16.1
GTEX-11P7K-1026-SM-5HL6Y 16.0
GTEX-XPT6-1626-SM-4B655 16.0
GTEX-13OVH-0726-SM-5N9BU 15.2
GTEX-ZTX8-1126-SM-51MRM 15.2
GTEX-QV44-1726-SM-4R1KG 14.9
GTEX-14A6H-2326-SM-5Q5B5 14.7
GTEX-11ONC-2226-SM-5HL6D 14.2
GTEX-XPVG-2226-SM-4B65U 14.0
GTEX-Y9LG-1726-SM-4VBQE 13.7
GTEX-RM2N-1326-SM-48FCW 13.6
GTEX-147F4-0626-SM-5LUAK 13.2
GTEX-ZDTT-2026-SM-5K7TY 12.1
GTEX-Y8E4-2226-SM-5LU94 11.5
GTEX-U3ZH-1526-SM-4DXV1 10.6
GTEX-ZAB4-0126-SM-5CVMG 9.5
GTEX-RN64-2326-SM-48FDW 9.3
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

96.5

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 96.5
FF:10026-101D8 34,53,86 years, male 96.9
FF:10096-102C6 14-64 years, male 96.0

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