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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 67.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 54.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 55.7
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 55.9
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 78.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 56.9
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 86.1
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 56.0
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 61.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 39.7
Min RPKM: 9.3
Std RPKM: 5.9
Median RPKM: 23.9
GTEX-11WQC-2326-SM-5EQKE
39.7
GTEX-ZYT6-2726-SM-5GICP
36.7
GTEX-11ZUS-2726-SM-5FQUA
36.4
GTEX-117YW-1526-SM-5EGGP
36.3
GTEX-Z93S-1726-SM-5HL8G
35.9
GTEX-T6MN-2026-SM-4DM7L
34.9
GTEX-11DXZ-2126-SM-59881
34.3
GTEX-QEG5-0126-SM-4R1JR
33.9
GTEX-131XE-0426-SM-5IJF4
33.9
GTEX-S4Q7-1226-SM-4AD5I
33.9
GTEX-ZAB5-2426-SM-5CVMW
33.3
GTEX-11GS4-2026-SM-5N9CP
32.9
GTEX-OXRL-2126-SM-3NM98
32.7
GTEX-U8T8-1126-SM-4DXUE
32.7
GTEX-11O72-0726-SM-5P9GO
32.7
GTEX-11NV4-1726-SM-5N9FC
32.6
GTEX-QEG4-0126-SM-48TZE
32.6
GTEX-ZTSS-1526-SM-51MTC
32.6
GTEX-13N1W-2626-SM-5IJEP
32.2
GTEX-OHPM-2126-SM-3LK75
32.0
GTEX-YEC3-1726-SM-5IFIK
31.7
GTEX-XAJ8-1326-SM-47JYT
31.6
GTEX-12WSH-0326-SM-5GCNH
31.5
GTEX-13OVL-0426-SM-5IFG6
31.4
GTEX-WK11-0326-SM-4OOS6
30.9
GTEX-14ABY-0626-SM-5Q5C9
30.8
GTEX-12696-0226-SM-5EGL3
30.8
GTEX-ZVTK-0126-SM-57WDG
30.8
GTEX-TKQ2-1526-SM-4DXUN
30.7
GTEX-139TS-1726-SM-5IJG5
30.6
GTEX-ZQUD-2026-SM-51MSM
30.3
GTEX-REY6-0126-SM-48FDT
30.2
GTEX-11EI6-2226-SM-5EGJM
30.2
GTEX-PW2O-1426-SM-48TCD
29.9
GTEX-117XS-2026-SM-5GID1
29.8
GTEX-13OW5-2526-SM-5L3I1
29.5
GTEX-S7PM-0626-SM-4AD4Q
29.4
GTEX-1399Q-2826-SM-5IJEZ
29.3
GTEX-U4B1-1526-SM-4DXSL
29.3
GTEX-Y111-2426-SM-4TT23
29.1
GTEX-12WSL-2326-SM-5DUXQ
29.1
GTEX-11EQ9-1926-SM-5PNVV
29.0
GTEX-ZVZP-2226-SM-57WBF
28.9
GTEX-Q2AI-1226-SM-48U14
28.9
GTEX-139TT-2226-SM-5LZWO
28.8
GTEX-N7MS-0126-SM-3TW8O
28.8
GTEX-13112-0226-SM-5P9IV
28.7
GTEX-OOBK-2126-SM-3LK5T
28.6
GTEX-13FLW-2126-SM-5N9FD
28.5
GTEX-13VXU-0726-SM-5J2O7
28.5
GTEX-11OF3-1826-SM-5987N
28.3
GTEX-SNOS-1126-SM-4DM67
27.9
GTEX-145MO-0126-SM-5S2QU
27.9
GTEX-12ZZY-0126-SM-5LZV2
27.6
GTEX-XLM4-1526-SM-4AT6D
27.4
GTEX-13FHP-2826-SM-5IJFW
27.2
GTEX-111CU-1726-SM-5EGHM
26.9
GTEX-13NZB-2026-SM-5MR4M
26.5
GTEX-T5JC-0726-SM-4DM55
26.4
GTEX-R55E-0726-SM-48FCZ
26.3
GTEX-UPJH-0126-SM-4IHLL
26.2
GTEX-144GM-0426-SM-5Q5C8
26.1
GTEX-S7SE-0326-SM-4AT5Q
25.9
GTEX-V955-1926-SM-4KL1L
25.9
GTEX-OIZH-2126-SM-3NB1P
25.8
GTEX-XBEC-0126-SM-4GIDT
25.5
GTEX-ZV7C-2026-SM-5NQ8F
25.4
GTEX-144GL-0726-SM-5LU4P
25.3
GTEX-1212Z-0326-SM-5FQSJ
25.3
GTEX-13111-1526-SM-5EGJX
25.2
GTEX-11P82-1526-SM-5BC5M
25.0
GTEX-U8XE-0126-SM-4E3I3
24.8
GTEX-XQ3S-2726-SM-4BOP2
24.7
GTEX-XGQ4-2026-SM-4AT6G
24.6
GTEX-13NZA-2526-SM-5IJFX
24.5
GTEX-X5EB-2026-SM-4E3KA
24.5
GTEX-11NUK-2626-SM-5A5MB
24.5
GTEX-X3Y1-2626-SM-4PQZI
24.4
GTEX-111FC-1926-SM-5GZYC
24.4
GTEX-WH7G-1926-SM-4LVMM
24.3
GTEX-139T6-1226-SM-5IFFC
24.2
GTEX-QV31-1126-SM-4R1K4
24.2
GTEX-WOFM-1126-SM-4OOSB
24.1
GTEX-R55C-1426-SM-48FED
24.0
GTEX-ZYFC-0126-SM-5GIEH
24.0
GTEX-ZPU1-2126-SM-57WED
24.0
GTEX-V1D1-2126-SM-4JBH4
23.9
GTEX-12C56-1426-SM-5FQSW
23.8
GTEX-XMK1-2026-SM-4B65K
23.8
GTEX-111YS-2026-SM-5EGGL
23.6
GTEX-TKQ1-0926-SM-4DXU2
23.6
GTEX-ZUA1-2726-SM-59HLJ
23.6
GTEX-13O1R-0726-SM-5IJEI
23.5
GTEX-ZT9W-2226-SM-57WFU
23.5
GTEX-12WSI-2126-SM-5GCMV
23.4
GTEX-11LCK-2326-SM-5HL53
23.4
GTEX-SUCS-1326-SM-4DM5T
23.1
GTEX-WFG8-1926-SM-4LVM1
23.0
GTEX-132QS-1226-SM-5P9GD
23.0
GTEX-1339X-1926-SM-5PNVP
23.0
GTEX-11NSD-1026-SM-5N9BE
23.0
GTEX-S95S-1126-SM-4B64E
22.9
GTEX-YEC4-1526-SM-4W1YU
22.7
GTEX-YF7O-2026-SM-4W1YE
22.7
GTEX-WZTO-0326-SM-4PQYZ
22.6
GTEX-T8EM-0126-SM-4DM5R
22.5
GTEX-WHSB-2126-SM-4M1XF
22.5
GTEX-OOBJ-2126-SM-3NB1N
22.5
GTEX-13NYB-2226-SM-5MR58
22.4
GTEX-Y5V6-1726-SM-4VDSZ
22.4
GTEX-147JS-0126-SM-5S2TW
22.2
GTEX-R55D-0126-SM-48FEL
22.2
GTEX-11WQK-2826-SM-5EQKH
22.2
GTEX-11EQ8-1426-SM-5EGJR
21.9
GTEX-11TUW-2226-SM-5EQL9
21.9
GTEX-RUSQ-2126-SM-47JXK
21.9
GTEX-P4QR-0226-SM-3NMCH
21.9
GTEX-ZZ64-1126-SM-5GZXY
21.7
GTEX-14753-0626-SM-5Q5CY
21.7
GTEX-13N2G-0126-SM-5N9DV
21.6
GTEX-ZA64-1626-SM-5CVME
21.6
GTEX-WVLH-2626-SM-4MVNV
21.6
GTEX-ZDYS-1326-SM-5IJFF
21.5
GTEX-Q2AH-1526-SM-48TZG
21.5
GTEX-U3ZM-1626-SM-4DXSK
21.5
GTEX-S3XE-1526-SM-4AD5A
21.4
GTEX-YB5E-1926-SM-5IFIG
21.3
GTEX-RWSA-2426-SM-47JXR
21.2
GTEX-VJYA-1426-SM-4KL1Y
21.2
GTEX-13FTW-1326-SM-5LZZD
20.9
GTEX-145MH-2326-SM-5O9AW
20.8
GTEX-P4QS-2126-SM-3NMCF
20.7
GTEX-144GN-1626-SM-5Q5BU
20.3
GTEX-12WSM-1326-SM-5GCP9
20.2
GTEX-O5YT-2126-SM-3MJGD
20.1
GTEX-SNMC-1026-SM-4DM7K
20.0
GTEX-X261-2326-SM-4PQYU
19.9
GTEX-YFCO-1726-SM-4W21S
19.9
GTEX-YJ89-0626-SM-4TT3Z
19.3
GTEX-PLZ5-1526-SM-3P5ZX
19.2
GTEX-13O61-2026-SM-5J2M6
19.0
GTEX-ZT9X-1426-SM-5DUX1
18.8
GTEX-NFK9-0126-SM-3LK5H
18.8
GTEX-OIZI-0126-SM-3NB13
18.6
GTEX-13O21-1226-SM-5J2MK
18.6
GTEX-1399R-1626-SM-5P9GG
18.4
GTEX-WFON-2026-SM-4LVMW
18.3
GTEX-QLQ7-1426-SM-4R1JX
18.3
GTEX-145LT-0426-SM-5LUAP
18.0
GTEX-11TT1-2226-SM-5GU6B
18.0
GTEX-XBED-2026-SM-4AT5D
17.9
GTEX-111VG-1926-SM-5GIDO
17.7
GTEX-QMRM-1526-SM-4R1K6
17.6
GTEX-QLQW-1026-SM-447A9
17.0
GTEX-13OW6-0126-SM-5IJGM
16.9
GTEX-S33H-0126-SM-4AD62
16.1
GTEX-11P7K-1026-SM-5HL6Y
16.0
GTEX-XPT6-1626-SM-4B655
16.0
GTEX-13OVH-0726-SM-5N9BU
15.2
GTEX-ZTX8-1126-SM-51MRM
15.2
GTEX-QV44-1726-SM-4R1KG
14.9
GTEX-14A6H-2326-SM-5Q5B5
14.7
GTEX-11ONC-2226-SM-5HL6D
14.2
GTEX-XPVG-2226-SM-4B65U
14.0
GTEX-Y9LG-1726-SM-4VBQE
13.7
GTEX-RM2N-1326-SM-48FCW
13.6
GTEX-147F4-0626-SM-5LUAK
13.2
GTEX-ZDTT-2026-SM-5K7TY
12.1
GTEX-Y8E4-2226-SM-5LU94
11.5
GTEX-U3ZH-1526-SM-4DXV1
10.6
GTEX-ZAB4-0126-SM-5CVMG
9.5
GTEX-RN64-2326-SM-48FDW
9.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.