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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 154
Min RPKM: 5.9
Std RPKM: 23.7
Median RPKM: 18.3
GTEX-12WSJ-1326-SM-5GCOB
154.0
GTEX-Y114-1926-SM-4TT8J
131.2
GTEX-ZYWO-2026-SM-5GIDA
82.7
GTEX-ZGAY-2226-SM-4YCCX
76.3
GTEX-RU1J-1426-SM-46MUV
71.8
GTEX-11EM3-1826-SM-5A5KO
69.2
GTEX-UJHI-1326-SM-4IHJO
64.5
GTEX-13N11-1526-SM-5L3FL
64.0
GTEX-WEY5-0826-SM-4LMIH
57.1
GTEX-ZQG8-1126-SM-51MRL
52.7
GTEX-OHPL-2526-SM-3MJGT
52.0
GTEX-146FR-2426-SM-5NQAU
43.6
GTEX-12WSD-2926-SM-5LZUH
43.6
GTEX-YFC4-2926-SM-5IFJ8
42.4
GTEX-ZV6S-1326-SM-59HJA
39.7
GTEX-13W3W-2326-SM-5LU4Y
39.0
GTEX-P4PP-2526-SM-3P61P
37.7
GTEX-13OVI-0926-SM-5J1MI
37.3
GTEX-Q734-1426-SM-48TZQ
35.2
GTEX-W5WG-1026-SM-4LMIF
35.0
GTEX-ZTPG-2226-SM-57WF9
35.0
GTEX-PWN1-2526-SM-48TDS
33.0
GTEX-11GSP-2226-SM-5HL5Q
32.7
GTEX-ZP4G-0826-SM-4WWF3
31.1
GTEX-WRHU-2926-SM-4MVNQ
30.3
GTEX-QCQG-1226-SM-48U23
30.2
GTEX-TMMY-1926-SM-4DXUU
30.0
GTEX-13D11-1326-SM-5IJFY
29.1
GTEX-RWS6-1726-SM-47JXP
27.0
GTEX-ZYVF-0326-SM-5GIES
26.5
GTEX-PX3G-2526-SM-48TZV
25.7
GTEX-146FH-2626-SM-5Q5E1
25.5
GTEX-X15G-1926-SM-4PQZQ
25.2
GTEX-13U4I-2026-SM-5LU3L
25.1
GTEX-11DXX-1726-SM-5H11T
24.7
GTEX-13PVR-1426-SM-5S2PW
22.9
GTEX-145ME-1426-SM-5RQJS
22.7
GTEX-12ZZX-1926-SM-5EGKC
22.3
GTEX-XV7Q-1626-SM-4BRWC
22.1
GTEX-1399U-1526-SM-5J2N7
22.0
GTEX-XUW1-0326-SM-4BOOR
21.5
GTEX-147F3-1526-SM-5SIAK
21.1
GTEX-ZLWG-1126-SM-4WWFQ
20.2
GTEX-11VI4-0726-SM-5GU5B
19.8
GTEX-14DAQ-2326-SM-5S2QX
18.8
GTEX-ZE7O-2426-SM-57WD7
18.6
GTEX-ZXES-0626-SM-5E45P
18.5
GTEX-Y8LW-1426-SM-5RQJJ
18.3
GTEX-PWOO-2026-SM-48TDE
18.3
GTEX-1399S-2326-SM-5K7YV
18.1
GTEX-13QBU-1726-SM-5IJFQ
17.7
GTEX-14BMU-1926-SM-5S2QC
17.4
GTEX-ZVT2-0626-SM-5GICR
17.2
GTEX-14A5I-2726-SM-5SIB3
16.6
GTEX-131XG-2126-SM-5DUXG
16.3
GTEX-TSE9-2526-SM-4DXUS
15.9
GTEX-ZYY3-2626-SM-5N9DH
15.1
GTEX-11XUK-1326-SM-5EQM4
14.9
GTEX-13PL7-2726-SM-5L3GB
14.9
GTEX-PWCY-1726-SM-48TD3
14.9
GTEX-U3ZN-0926-SM-4DXTU
14.8
GTEX-131YS-2426-SM-5J2OD
14.7
GTEX-X8HC-2826-SM-46MWJ
14.1
GTEX-UPIC-1426-SM-4IHLQ
14.1
GTEX-S4P3-1126-SM-4AD52
13.9
GTEX-PLZ4-2726-SM-3P61A
13.6
GTEX-OHPK-2526-SM-3MJH9
13.6
GTEX-XUJ4-1626-SM-4BONV
13.4
GTEX-T6MO-1226-SM-4DM5S
13.4
GTEX-QDT8-2526-SM-48TYX
13.0
GTEX-P78B-2226-SM-3P5ZZ
12.8
GTEX-14AS3-1726-SM-5RQJV
12.8
GTEX-S4UY-1326-SM-4AD4X
12.4
GTEX-1117F-2526-SM-5GZY6
12.3
GTEX-11I78-2026-SM-5987C
12.1
GTEX-ZAJG-2926-SM-5HL8P
11.9
GTEX-ZVT3-2726-SM-5GU5X
11.6
GTEX-N7MT-1926-SM-3LK5N
11.4
GTEX-132AR-1626-SM-5EGHP
11.2
GTEX-12WSB-2426-SM-5EGJC
11.0
GTEX-ZZPU-2226-SM-5EGIV
11.0
GTEX-SE5C-1126-SM-4BRWZ
11.0
GTEX-T2IS-1926-SM-4DM74
10.6
GTEX-ZC5H-2226-SM-4WAWS
10.3
GTEX-QVJO-2526-SM-4R1KB
9.3
GTEX-13QIC-1826-SM-5J1MY
9.3
GTEX-TML8-1126-SM-4DXSS
9.0
GTEX-S7SF-1426-SM-4AT5A
8.9
GTEX-Y3IK-2226-SM-4YCD4
8.6
GTEX-S341-1226-SM-4AD5S
8.4
GTEX-11EMC-1926-SM-5A5JU
8.3
GTEX-YJ8O-1226-SM-5P9JE
7.3
GTEX-11P81-2126-SM-5HL6N
7.2
GTEX-NL3G-2526-SM-4SOIE
6.8
GTEX-11TTK-2726-SM-5GU58
6.1
GTEX-113JC-1926-SM-5N9GE
5.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.