We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
TES
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:26.3RPKM
FANTOM5:95.6Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015269

 

Antibody HPA018123

 

Squamous epithelial cells

Not detected   Medium  
   

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.3

GTEx sample id

RPKM

 

Vagina

Vagina
RPKM: 26.3
Samples: 96

Max RPKM: 154
Min RPKM: 5.9
Std RPKM: 23.7
Median RPKM: 18.3
GTEX-12WSJ-1326-SM-5GCOB 154.0
GTEX-Y114-1926-SM-4TT8J 131.2
GTEX-ZYWO-2026-SM-5GIDA 82.7
GTEX-ZGAY-2226-SM-4YCCX 76.3
GTEX-RU1J-1426-SM-46MUV 71.8
GTEX-11EM3-1826-SM-5A5KO 69.2
GTEX-UJHI-1326-SM-4IHJO 64.5
GTEX-13N11-1526-SM-5L3FL 64.0
GTEX-WEY5-0826-SM-4LMIH 57.1
GTEX-ZQG8-1126-SM-51MRL 52.7
GTEX-OHPL-2526-SM-3MJGT 52.0
GTEX-146FR-2426-SM-5NQAU 43.6
GTEX-12WSD-2926-SM-5LZUH 43.6
GTEX-YFC4-2926-SM-5IFJ8 42.4
GTEX-ZV6S-1326-SM-59HJA 39.7
GTEX-13W3W-2326-SM-5LU4Y 39.0
GTEX-P4PP-2526-SM-3P61P 37.7
GTEX-13OVI-0926-SM-5J1MI 37.3
GTEX-Q734-1426-SM-48TZQ 35.2
GTEX-W5WG-1026-SM-4LMIF 35.0
GTEX-ZTPG-2226-SM-57WF9 35.0
GTEX-PWN1-2526-SM-48TDS 33.0
GTEX-11GSP-2226-SM-5HL5Q 32.7
GTEX-ZP4G-0826-SM-4WWF3 31.1
GTEX-WRHU-2926-SM-4MVNQ 30.3
GTEX-QCQG-1226-SM-48U23 30.2
GTEX-TMMY-1926-SM-4DXUU 30.0
GTEX-13D11-1326-SM-5IJFY 29.1
GTEX-RWS6-1726-SM-47JXP 27.0
GTEX-ZYVF-0326-SM-5GIES 26.5
GTEX-PX3G-2526-SM-48TZV 25.7
GTEX-146FH-2626-SM-5Q5E1 25.5
GTEX-X15G-1926-SM-4PQZQ 25.2
GTEX-13U4I-2026-SM-5LU3L 25.1
GTEX-11DXX-1726-SM-5H11T 24.7
GTEX-13PVR-1426-SM-5S2PW 22.9
GTEX-145ME-1426-SM-5RQJS 22.7
GTEX-12ZZX-1926-SM-5EGKC 22.3
GTEX-XV7Q-1626-SM-4BRWC 22.1
GTEX-1399U-1526-SM-5J2N7 22.0
GTEX-XUW1-0326-SM-4BOOR 21.5
GTEX-147F3-1526-SM-5SIAK 21.1
GTEX-ZLWG-1126-SM-4WWFQ 20.2
GTEX-11VI4-0726-SM-5GU5B 19.8
GTEX-14DAQ-2326-SM-5S2QX 18.8
GTEX-ZE7O-2426-SM-57WD7 18.6
GTEX-ZXES-0626-SM-5E45P 18.5
GTEX-Y8LW-1426-SM-5RQJJ 18.3
GTEX-PWOO-2026-SM-48TDE 18.3
GTEX-1399S-2326-SM-5K7YV 18.1
GTEX-13QBU-1726-SM-5IJFQ 17.7
GTEX-14BMU-1926-SM-5S2QC 17.4
GTEX-ZVT2-0626-SM-5GICR 17.2
GTEX-14A5I-2726-SM-5SIB3 16.6
GTEX-131XG-2126-SM-5DUXG 16.3
GTEX-TSE9-2526-SM-4DXUS 15.9
GTEX-ZYY3-2626-SM-5N9DH 15.1
GTEX-11XUK-1326-SM-5EQM4 14.9
GTEX-13PL7-2726-SM-5L3GB 14.9
GTEX-PWCY-1726-SM-48TD3 14.9
GTEX-U3ZN-0926-SM-4DXTU 14.8
GTEX-131YS-2426-SM-5J2OD 14.7
GTEX-X8HC-2826-SM-46MWJ 14.1
GTEX-UPIC-1426-SM-4IHLQ 14.1
GTEX-S4P3-1126-SM-4AD52 13.9
GTEX-PLZ4-2726-SM-3P61A 13.6
GTEX-OHPK-2526-SM-3MJH9 13.6
GTEX-XUJ4-1626-SM-4BONV 13.4
GTEX-T6MO-1226-SM-4DM5S 13.4
GTEX-QDT8-2526-SM-48TYX 13.0
GTEX-P78B-2226-SM-3P5ZZ 12.8
GTEX-14AS3-1726-SM-5RQJV 12.8
GTEX-S4UY-1326-SM-4AD4X 12.4
GTEX-1117F-2526-SM-5GZY6 12.3
GTEX-11I78-2026-SM-5987C 12.1
GTEX-ZAJG-2926-SM-5HL8P 11.9
GTEX-ZVT3-2726-SM-5GU5X 11.6
GTEX-N7MT-1926-SM-3LK5N 11.4
GTEX-132AR-1626-SM-5EGHP 11.2
GTEX-12WSB-2426-SM-5EGJC 11.0
GTEX-ZZPU-2226-SM-5EGIV 11.0
GTEX-SE5C-1126-SM-4BRWZ 11.0
GTEX-T2IS-1926-SM-4DM74 10.6
GTEX-ZC5H-2226-SM-4WAWS 10.3
GTEX-QVJO-2526-SM-4R1KB 9.3
GTEX-13QIC-1826-SM-5J1MY 9.3
GTEX-TML8-1126-SM-4DXSS 9.0
GTEX-S7SF-1426-SM-4AT5A 8.9
GTEX-Y3IK-2226-SM-4YCD4 8.6
GTEX-S341-1226-SM-4AD5S 8.4
GTEX-11EMC-1926-SM-5A5JU 8.3
GTEX-YJ8O-1226-SM-5P9JE 7.3
GTEX-11P81-2126-SM-5HL6N 7.2
GTEX-NL3G-2526-SM-4SOIE 6.8
GTEX-11TTK-2726-SM-5GU58 6.1
GTEX-113JC-1926-SM-5N9GE 5.9
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

95.6

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 95.6
FF:10204-103F6 68 years, female 95.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.