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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:50.7TPM
GTEx:21.5RPKM
FANTOM5:66.7Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027850

 

Cells in seminiferous ducts

Medium  

Leydig cells

Not detected  
 
 

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

50.7

overview Male, age 56
Sample 1
TPM: 72.8
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 49.5
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 55.1
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 57.3
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 47.0
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 45.0
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 37.4
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 40.5
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 51.0
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 51.0
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21.5

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 21.5
Samples: 172

Max RPKM: 41.9
Min RPKM: 10.3
Std RPKM: 5.2
Median RPKM: 21.2
GTEX-WFON-2026-SM-4LVMW 41.9
GTEX-YEC4-1526-SM-4W1YU 37.7
GTEX-S33H-0126-SM-4AD62 32.8
GTEX-ZTX8-1126-SM-51MRM 32.7
GTEX-QLQ7-1426-SM-4R1JX 32.2
GTEX-WFG8-1926-SM-4LVM1 31.5
GTEX-R55C-1426-SM-48FED 31.1
GTEX-13FTW-1326-SM-5LZZD 30.5
GTEX-Y9LG-1726-SM-4VBQE 29.8
GTEX-PLZ5-1526-SM-3P5ZX 29.6
GTEX-14A6H-2326-SM-5Q5B5 29.5
GTEX-ZDTT-2026-SM-5K7TY 29.2
GTEX-13O61-2026-SM-5J2M6 29.1
GTEX-144GN-1626-SM-5Q5BU 29.1
GTEX-U3ZM-1626-SM-4DXSK 28.6
GTEX-XBED-2026-SM-4AT5D 28.4
GTEX-O5YT-2126-SM-3MJGD 28.3
GTEX-1339X-1926-SM-5PNVP 27.9
GTEX-YFCO-1726-SM-4W21S 27.8
GTEX-Y8E4-2226-SM-5LU94 27.8
GTEX-XMK1-2026-SM-4B65K 27.8
GTEX-XGQ4-2026-SM-4AT6G 27.7
GTEX-13OVH-0726-SM-5N9BU 27.3
GTEX-12C56-1426-SM-5FQSW 27.2
GTEX-Y5V6-1726-SM-4VDSZ 27.1
GTEX-QLQW-1026-SM-447A9 27.0
GTEX-111CU-1726-SM-5EGHM 27.0
GTEX-SUCS-1326-SM-4DM5T 26.8
GTEX-147F4-0626-SM-5LUAK 26.8
GTEX-XPT6-1626-SM-4B655 26.7
GTEX-YB5E-1926-SM-5IFIG 26.7
GTEX-ZT9W-2226-SM-57WFU 26.7
GTEX-P4QS-2126-SM-3NMCF 26.1
GTEX-OIZI-0126-SM-3NB13 25.8
GTEX-ZAB4-0126-SM-5CVMG 25.8
GTEX-U3ZH-1526-SM-4DXV1 25.7
GTEX-11ONC-2226-SM-5HL6D 25.6
GTEX-ZUA1-2726-SM-59HLJ 25.6
GTEX-XPVG-2226-SM-4B65U 25.3
GTEX-TKQ1-0926-SM-4DXU2 25.3
GTEX-T5JC-0726-SM-4DM55 25.1
GTEX-WHSB-2126-SM-4M1XF 25.0
GTEX-1212Z-0326-SM-5FQSJ 25.0
GTEX-OXRL-2126-SM-3NM98 24.9
GTEX-ZZ64-1126-SM-5GZXY 24.8
GTEX-YJ89-0626-SM-4TT3Z 24.8
GTEX-SNMC-1026-SM-4DM7K 24.7
GTEX-S7SE-0326-SM-4AT5Q 24.6
GTEX-QMRM-1526-SM-4R1K6 24.5
GTEX-13N2G-0126-SM-5N9DV 24.5
GTEX-OIZH-2126-SM-3NB1P 24.2
GTEX-11P7K-1026-SM-5HL6Y 24.2
GTEX-13O21-1226-SM-5J2MK 24.2
GTEX-13NZB-2026-SM-5MR4M 24.0
GTEX-NFK9-0126-SM-3LK5H 23.9
GTEX-WVLH-2626-SM-4MVNV 23.9
GTEX-TKQ2-1526-SM-4DXUN 23.8
GTEX-S3XE-1526-SM-4AD5A 23.5
GTEX-11EI6-2226-SM-5EGJM 23.5
GTEX-U4B1-1526-SM-4DXSL 23.5
GTEX-139T6-1226-SM-5IFFC 23.5
GTEX-QV44-1726-SM-4R1KG 23.4
GTEX-11O72-0726-SM-5P9GO 23.4
GTEX-ZPU1-2126-SM-57WED 23.3
GTEX-X3Y1-2626-SM-4PQZI 23.1
GTEX-X261-2326-SM-4PQYU 23.1
GTEX-147JS-0126-SM-5S2TW 23.1
GTEX-13NYB-2226-SM-5MR58 22.9
GTEX-RM2N-1326-SM-48FCW 22.7
GTEX-11P82-1526-SM-5BC5M 22.6
GTEX-S4Q7-1226-SM-4AD5I 22.5
GTEX-YEC3-1726-SM-5IFIK 22.5
GTEX-SNOS-1126-SM-4DM67 22.4
GTEX-13OW6-0126-SM-5IJGM 22.4
GTEX-YF7O-2026-SM-4W1YE 22.4
GTEX-RWSA-2426-SM-47JXR 22.4
GTEX-Q2AI-1226-SM-48U14 22.0
GTEX-132QS-1226-SM-5P9GD 21.9
GTEX-R55E-0726-SM-48FCZ 21.9
GTEX-139TT-2226-SM-5LZWO 21.8
GTEX-ZA64-1626-SM-5CVME 21.8
GTEX-ZT9X-1426-SM-5DUX1 21.8
GTEX-ZDYS-1326-SM-5IJFF 21.7
GTEX-ZYT6-2726-SM-5GICP 21.6
GTEX-ZVTK-0126-SM-57WDG 21.4
GTEX-XBEC-0126-SM-4GIDT 21.3
GTEX-Q2AH-1526-SM-48TZG 21.2
GTEX-ZTSS-1526-SM-51MTC 21.2
GTEX-11NSD-1026-SM-5N9BE 21.1
GTEX-14753-0626-SM-5Q5CY 21.1
GTEX-PW2O-1426-SM-48TCD 21.0
GTEX-145MH-2326-SM-5O9AW 20.9
GTEX-1399Q-2826-SM-5IJEZ 20.9
GTEX-RN64-2326-SM-48FDW 20.9
GTEX-XAJ8-1326-SM-47JYT 20.8
GTEX-WOFM-1126-SM-4OOSB 20.6
GTEX-QV31-1126-SM-4R1K4 20.6
GTEX-WZTO-0326-SM-4PQYZ 20.5
GTEX-13NZA-2526-SM-5IJFX 20.2
GTEX-145LT-0426-SM-5LUAP 20.2
GTEX-UPJH-0126-SM-4IHLL 19.8
GTEX-111FC-1926-SM-5GZYC 19.8
GTEX-144GL-0726-SM-5LU4P 19.8
GTEX-12WSH-0326-SM-5GCNH 19.8
GTEX-12WSI-2126-SM-5GCMV 19.8
GTEX-R55D-0126-SM-48FEL 19.7
GTEX-111YS-2026-SM-5EGGL 19.6
GTEX-11GS4-2026-SM-5N9CP 19.5
GTEX-ZV7C-2026-SM-5NQ8F 19.5
GTEX-VJYA-1426-SM-4KL1Y 19.5
GTEX-ZQUD-2026-SM-51MSM 19.4
GTEX-S95S-1126-SM-4B64E 19.4
GTEX-OOBJ-2126-SM-3NB1N 19.0
GTEX-OHPM-2126-SM-3LK75 18.9
GTEX-11DXZ-2126-SM-59881 18.7
GTEX-11EQ9-1926-SM-5PNVV 18.7
GTEX-13112-0226-SM-5P9IV 18.6
GTEX-X5EB-2026-SM-4E3KA 18.5
GTEX-13FLW-2126-SM-5N9FD 18.5
GTEX-131XE-0426-SM-5IJF4 18.5
GTEX-V955-1926-SM-4KL1L 18.4
GTEX-T6MN-2026-SM-4DM7L 18.4
GTEX-ZAB5-2426-SM-5CVMW 18.4
GTEX-117XS-2026-SM-5GID1 18.3
GTEX-12ZZY-0126-SM-5LZV2 18.3
GTEX-11EQ8-1426-SM-5EGJR 18.2
GTEX-139TS-1726-SM-5IJG5 18.0
GTEX-ZVZP-2226-SM-57WBF 17.9
GTEX-11WQC-2326-SM-5EQKE 17.9
GTEX-13OVL-0426-SM-5IFG6 17.8
GTEX-T8EM-0126-SM-4DM5R 17.7
GTEX-13111-1526-SM-5EGJX 17.3
GTEX-11OF3-1826-SM-5987N 17.3
GTEX-11WQK-2826-SM-5EQKH 17.2
GTEX-V1D1-2126-SM-4JBH4 17.2
GTEX-11NUK-2626-SM-5A5MB 17.0
GTEX-144GM-0426-SM-5Q5C8 16.9
GTEX-13OW5-2526-SM-5L3I1 16.8
GTEX-1399R-1626-SM-5P9GG 16.8
GTEX-13FHP-2826-SM-5IJFW 16.7
GTEX-U8T8-1126-SM-4DXUE 16.6
GTEX-XLM4-1526-SM-4AT6D 16.4
GTEX-12WSL-2326-SM-5DUXQ 16.4
GTEX-13N1W-2626-SM-5IJEP 16.4
GTEX-WK11-0326-SM-4OOS6 16.3
GTEX-145MO-0126-SM-5S2QU 16.1
GTEX-13VXU-0726-SM-5J2O7 16.1
GTEX-OOBK-2126-SM-3LK5T 16.0
GTEX-XQ3S-2726-SM-4BOP2 16.0
GTEX-REY6-0126-SM-48FDT 15.9
GTEX-12696-0226-SM-5EGL3 15.9
GTEX-QEG4-0126-SM-48TZE 15.7
GTEX-11TT1-2226-SM-5GU6B 15.5
GTEX-S7PM-0626-SM-4AD4Q 15.2
GTEX-WH7G-1926-SM-4LVMM 15.2
GTEX-ZYFC-0126-SM-5GIEH 15.1
GTEX-QEG5-0126-SM-4R1JR 14.5
GTEX-11ZUS-2726-SM-5FQUA 14.4
GTEX-11NV4-1726-SM-5N9FC 14.4
GTEX-117YW-1526-SM-5EGGP 14.3
GTEX-Z93S-1726-SM-5HL8G 14.1
GTEX-N7MS-0126-SM-3TW8O 14.1
GTEX-Y111-2426-SM-4TT23 13.8
GTEX-14ABY-0626-SM-5Q5C9 13.7
GTEX-12WSM-1326-SM-5GCP9 13.7
GTEX-11LCK-2326-SM-5HL53 12.9
GTEX-11TUW-2226-SM-5EQL9 12.8
GTEX-13O1R-0726-SM-5IJEI 12.1
GTEX-U8XE-0126-SM-4E3I3 10.7
GTEX-RUSQ-2126-SM-47JXK 10.6
GTEX-111VG-1926-SM-5GIDO 10.4
GTEX-P4QR-0226-SM-3NMCH 10.3
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

66.7

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 66.7
FF:10096-102C6 14-64 years, male 80.7
FF:10026-101D8 34,53,86 years, male 52.7

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