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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 64.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 62.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 64.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 60.8
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 66.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 56.7
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 104.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 71.2
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 88.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 49.6
Min RPKM: 22.8
Std RPKM: 4.7
Median RPKM: 36.8
GTEX-YFCO-1726-SM-4W21S
49.6
GTEX-QEG5-0126-SM-4R1JR
49.5
GTEX-WH7G-1926-SM-4LVMM
49.3
GTEX-WHSB-2126-SM-4M1XF
48.5
GTEX-P4QR-0226-SM-3NMCH
47.4
GTEX-111VG-1926-SM-5GIDO
46.3
GTEX-U8T8-1126-SM-4DXUE
46.1
GTEX-12WSM-1326-SM-5GCP9
45.7
GTEX-ZV7C-2026-SM-5NQ8F
45.7
GTEX-OXRL-2126-SM-3NM98
44.5
GTEX-11EQ8-1426-SM-5EGJR
44.4
GTEX-ZPU1-2126-SM-57WED
44.2
GTEX-YEC4-1526-SM-4W1YU
44.1
GTEX-V1D1-2126-SM-4JBH4
43.7
GTEX-OIZH-2126-SM-3NB1P
43.1
GTEX-REY6-0126-SM-48FDT
43.1
GTEX-R55E-0726-SM-48FCZ
43.0
GTEX-S3XE-1526-SM-4AD5A
43.0
GTEX-TKQ1-0926-SM-4DXU2
42.8
GTEX-RM2N-1326-SM-48FCW
42.7
GTEX-ZTSS-1526-SM-51MTC
42.7
GTEX-139TT-2226-SM-5LZWO
42.5
GTEX-XBEC-0126-SM-4GIDT
42.0
GTEX-YF7O-2026-SM-4W1YE
41.9
GTEX-132QS-1226-SM-5P9GD
41.7
GTEX-S4Q7-1226-SM-4AD5I
41.6
GTEX-T8EM-0126-SM-4DM5R
41.6
GTEX-11EQ9-1926-SM-5PNVV
41.6
GTEX-139TS-1726-SM-5IJG5
41.6
GTEX-14ABY-0626-SM-5Q5C9
41.5
GTEX-S7SE-0326-SM-4AT5Q
41.2
GTEX-117XS-2026-SM-5GID1
41.1
GTEX-T6MN-2026-SM-4DM7L
41.1
GTEX-ZQUD-2026-SM-51MSM
40.8
GTEX-145MO-0126-SM-5S2QU
40.7
GTEX-12WSH-0326-SM-5GCNH
40.6
GTEX-ZVZP-2226-SM-57WBF
40.5
GTEX-OIZI-0126-SM-3NB13
40.3
GTEX-ZA64-1626-SM-5CVME
40.3
GTEX-ZDYS-1326-SM-5IJFF
40.2
GTEX-WK11-0326-SM-4OOS6
40.2
GTEX-OHPM-2126-SM-3LK75
39.9
GTEX-11GS4-2026-SM-5N9CP
39.8
GTEX-13VXU-0726-SM-5J2O7
39.8
GTEX-144GL-0726-SM-5LU4P
39.8
GTEX-11WQK-2826-SM-5EQKH
39.6
GTEX-13OVL-0426-SM-5IFG6
39.6
GTEX-WFG8-1926-SM-4LVM1
39.6
GTEX-145LT-0426-SM-5LUAP
39.4
GTEX-13111-1526-SM-5EGJX
39.4
GTEX-1212Z-0326-SM-5FQSJ
39.2
GTEX-14753-0626-SM-5Q5CY
39.2
GTEX-Y8E4-2226-SM-5LU94
39.1
GTEX-XPT6-1626-SM-4B655
39.1
GTEX-Y9LG-1726-SM-4VBQE
39.0
GTEX-SNMC-1026-SM-4DM7K
38.7
GTEX-S7PM-0626-SM-4AD4Q
38.7
GTEX-11WQC-2326-SM-5EQKE
38.7
GTEX-13112-0226-SM-5P9IV
38.5
GTEX-XBED-2026-SM-4AT5D
38.4
GTEX-ZTX8-1126-SM-51MRM
38.3
GTEX-RUSQ-2126-SM-47JXK
38.3
GTEX-ZYT6-2726-SM-5GICP
38.2
GTEX-12WSL-2326-SM-5DUXQ
38.2
GTEX-Y111-2426-SM-4TT23
38.2
GTEX-XAJ8-1326-SM-47JYT
38.1
GTEX-1399R-1626-SM-5P9GG
38.1
GTEX-13N2G-0126-SM-5N9DV
38.1
GTEX-11DXZ-2126-SM-59881
38.0
GTEX-O5YT-2126-SM-3MJGD
37.9
GTEX-ZUA1-2726-SM-59HLJ
37.8
GTEX-X5EB-2026-SM-4E3KA
37.7
GTEX-Q2AI-1226-SM-48U14
37.7
GTEX-SNOS-1126-SM-4DM67
37.6
GTEX-ZZ64-1126-SM-5GZXY
37.5
GTEX-11TT1-2226-SM-5GU6B
37.5
GTEX-U4B1-1526-SM-4DXSL
37.5
GTEX-13FHP-2826-SM-5IJFW
37.3
GTEX-T5JC-0726-SM-4DM55
37.3
GTEX-ZT9W-2226-SM-57WFU
37.3
GTEX-ZAB5-2426-SM-5CVMW
37.3
GTEX-13O21-1226-SM-5J2MK
37.1
GTEX-147JS-0126-SM-5S2TW
37.1
GTEX-TKQ2-1526-SM-4DXUN
37.0
GTEX-13N1W-2626-SM-5IJEP
37.0
GTEX-144GM-0426-SM-5Q5C8
36.9
GTEX-12ZZY-0126-SM-5LZV2
36.8
GTEX-V955-1926-SM-4KL1L
36.7
GTEX-1399Q-2826-SM-5IJEZ
36.7
GTEX-13NZB-2026-SM-5MR4M
36.5
GTEX-11EI6-2226-SM-5EGJM
36.5
GTEX-11ZUS-2726-SM-5FQUA
36.3
GTEX-U3ZH-1526-SM-4DXV1
36.3
GTEX-11NV4-1726-SM-5N9FC
36.3
GTEX-Y5V6-1726-SM-4VDSZ
36.2
GTEX-XGQ4-2026-SM-4AT6G
36.1
GTEX-144GN-1626-SM-5Q5BU
36.1
GTEX-S33H-0126-SM-4AD62
35.9
GTEX-OOBK-2126-SM-3LK5T
35.8
GTEX-RN64-2326-SM-48FDW
35.7
GTEX-S95S-1126-SM-4B64E
35.7
GTEX-U8XE-0126-SM-4E3I3
35.7
GTEX-N7MS-0126-SM-3TW8O
35.0
GTEX-Q2AH-1526-SM-48TZG
35.0
GTEX-QV44-1726-SM-4R1KG
35.0
GTEX-XLM4-1526-SM-4AT6D
34.9
GTEX-PW2O-1426-SM-48TCD
34.9
GTEX-13FTW-1326-SM-5LZZD
34.9
GTEX-139T6-1226-SM-5IFFC
34.9
GTEX-PLZ5-1526-SM-3P5ZX
34.8
GTEX-145MH-2326-SM-5O9AW
34.8
GTEX-11NSD-1026-SM-5N9BE
34.8
GTEX-R55C-1426-SM-48FED
34.8
GTEX-ZVTK-0126-SM-57WDG
34.6
GTEX-131XE-0426-SM-5IJF4
34.5
GTEX-R55D-0126-SM-48FEL
34.4
GTEX-SUCS-1326-SM-4DM5T
34.3
GTEX-QLQW-1026-SM-447A9
34.1
GTEX-OOBJ-2126-SM-3NB1N
34.1
GTEX-11P82-1526-SM-5BC5M
34.1
GTEX-UPJH-0126-SM-4IHLL
34.0
GTEX-13OW6-0126-SM-5IJGM
33.9
GTEX-WOFM-1126-SM-4OOSB
33.8
GTEX-11OF3-1826-SM-5987N
33.8
GTEX-X3Y1-2626-SM-4PQZI
33.7
GTEX-11TUW-2226-SM-5EQL9
33.7
GTEX-ZDTT-2026-SM-5K7TY
33.7
GTEX-YB5E-1926-SM-5IFIG
33.6
GTEX-11NUK-2626-SM-5A5MB
33.6
GTEX-12C56-1426-SM-5FQSW
33.6
GTEX-X261-2326-SM-4PQYU
33.5
GTEX-111CU-1726-SM-5EGHM
33.4
GTEX-WVLH-2626-SM-4MVNV
33.3
GTEX-QV31-1126-SM-4R1K4
33.2
GTEX-VJYA-1426-SM-4KL1Y
33.1
GTEX-13O61-2026-SM-5J2M6
33.1
GTEX-XMK1-2026-SM-4B65K
32.9
GTEX-13FLW-2126-SM-5N9FD
32.9
GTEX-QLQ7-1426-SM-4R1JX
32.8
GTEX-11LCK-2326-SM-5HL53
32.8
GTEX-13OW5-2526-SM-5L3I1
32.8
GTEX-1339X-1926-SM-5PNVP
32.8
GTEX-12696-0226-SM-5EGL3
32.7
GTEX-13NZA-2526-SM-5IJFX
32.6
GTEX-XQ3S-2726-SM-4BOP2
32.6
GTEX-WFON-2026-SM-4LVMW
32.4
GTEX-12WSI-2126-SM-5GCMV
32.4
GTEX-U3ZM-1626-SM-4DXSK
32.3
GTEX-YEC3-1726-SM-5IFIK
32.3
GTEX-117YW-1526-SM-5EGGP
32.2
GTEX-13O1R-0726-SM-5IJEI
32.2
GTEX-111YS-2026-SM-5EGGL
32.1
GTEX-YJ89-0626-SM-4TT3Z
32.0
GTEX-XPVG-2226-SM-4B65U
32.0
GTEX-QEG4-0126-SM-48TZE
32.0
GTEX-13NYB-2226-SM-5MR58
31.6
GTEX-P4QS-2126-SM-3NMCF
31.5
GTEX-Z93S-1726-SM-5HL8G
31.1
GTEX-111FC-1926-SM-5GZYC
31.1
GTEX-11O72-0726-SM-5P9GO
30.9
GTEX-NFK9-0126-SM-3LK5H
30.8
GTEX-11P7K-1026-SM-5HL6Y
30.7
GTEX-RWSA-2426-SM-47JXR
30.3
GTEX-ZYFC-0126-SM-5GIEH
30.2
GTEX-14A6H-2326-SM-5Q5B5
29.6
GTEX-QMRM-1526-SM-4R1K6
29.4
GTEX-ZT9X-1426-SM-5DUX1
27.7
GTEX-13OVH-0726-SM-5N9BU
27.7
GTEX-11ONC-2226-SM-5HL6D
27.0
GTEX-WZTO-0326-SM-4PQYZ
26.2
GTEX-ZAB4-0126-SM-5CVMG
23.9
GTEX-147F4-0626-SM-5LUAK
22.8
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.