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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:71.7TPM
GTEx:21.3RPKM
FANTOM5:18.3Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Medium
Myoepithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA001383

 

Antibody CAB000043

 

Antibody CAB020416

 

Antibody CAB062555

 

Adipocytes

Not detected   Not detected   Not detected   Not detected  

Glandular cells

Medium   Low   Medium   Not detected  

Myoepithelial cells

Medium   Low   Medium   Not detected  
       
       
       

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

71.7

overview Female, age 52
Sample 1
TPM: 36.2
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 40.7
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 175.1
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 34.7
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21.3

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 21.3
Samples: 214

Max RPKM: 73
Min RPKM: 1.4
Std RPKM: 16.6
Median RPKM: 16.9
GTEX-11P7K-0726-SM-5EGKX 73.0
GTEX-13FTY-2226-SM-5J1ND 66.4
GTEX-145LT-0726-SM-5S2VM 64.8
GTEX-T5JC-2126-SM-32PMO 61.2
GTEX-11PRG-0826-SM-5EQ6A 58.0
GTEX-YFC4-1426-SM-5IFJG 56.5
GTEX-14ABY-2126-SM-5QGQZ 55.8
GTEX-13CF2-2026-SM-5K7VI 54.4
GTEX-XOT4-0726-SM-4GIAW 53.9
GTEX-WYBS-0926-SM-3NM94 52.4
GTEX-ZXES-0826-SM-5E43C 52.2
GTEX-13OW5-2226-SM-5L3HC 52.1
GTEX-111YS-1926-SM-5GICC 51.8
GTEX-U412-1826-SM-4DXTJ 51.6
GTEX-T6MN-0726-SM-32PML 50.8
GTEX-S341-1526-SM-4AD6K 50.3
GTEX-13NZB-2126-SM-5MR4Y 49.7
GTEX-U3ZH-1426-SM-4DXSR 49.7
GTEX-WYVS-1726-SM-3NMAY 48.6
GTEX-SIU7-1626-SM-4BRUK 47.2
GTEX-ZC5H-2626-SM-5J2MG 46.5
GTEX-VUSG-2226-SM-4KKZO 46.4
GTEX-ZF2S-2026-SM-5E461 45.7
GTEX-11GS4-2126-SM-5A5KR 43.1
GTEX-ZTX8-1226-SM-4YCE9 42.5
GTEX-WYJK-1326-SM-3NB2T 42.4
GTEX-X15G-1626-SM-3NMB3 42.3
GTEX-139T8-0826-SM-5L3DE 42.2
GTEX-XUZC-1626-SM-4BRVP 41.9
GTEX-T2IS-1526-SM-32QPR 40.8
GTEX-Y111-2026-SM-4SOJA 40.7
GTEX-131YS-0626-SM-5EGKL 40.7
GTEX-QEG5-0726-SM-4R1JQ 40.6
GTEX-T5JW-2026-SM-4DM63 40.3
GTEX-13PL6-2926-SM-5L3I2 39.5
GTEX-ZF29-1926-SM-5S2P1 39.2
GTEX-Q2AG-0326-SM-48U1O 38.5
GTEX-Y3IK-2326-SM-4WWDT 38.3
GTEX-UPK5-2326-SM-3P5Z8 37.8
GTEX-11TT1-2126-SM-5GU5Y 37.5
GTEX-11EMC-2026-SM-5A5JV 37.1
GTEX-12ZZX-1126-SM-5EGKB 37.0
GTEX-R3RS-0626-SM-48FE1 36.5
GTEX-11WQC-1726-SM-5GU4W 36.3
GTEX-R55F-1726-SM-2TF4R 36.0
GTEX-1269C-2426-SM-5FQSN 36.0
GTEX-ZLV1-1426-SM-4WWES 35.5
GTEX-ZVE2-1226-SM-5NQ8R 34.9
GTEX-ZU9S-1926-SM-5NQBP 34.0
GTEX-13N11-1726-SM-5J1OJ 33.6
GTEX-QEL4-2126-SM-447AE 33.4
GTEX-11DXW-0626-SM-5N9ER 33.1
GTEX-1399U-1826-SM-5PNZ1 32.9
GTEX-131XW-0726-SM-5EGK3 32.8
GTEX-13NZ9-1026-SM-5MR5K 32.5
GTEX-ZY6K-1626-SM-5GZWV 32.5
GTEX-ZVT2-1826-SM-5NQ8W 31.7
GTEX-11EM3-1326-SM-5N9C6 31.6
GTEX-ZVTK-0326-SM-51MRR 31.6
GTEX-13QIC-2326-SM-5LU5N 31.5
GTEX-147F4-2826-SM-5NQBN 31.2
GTEX-XBED-1626-SM-47JYN 31.0
GTEX-RU72-0626-SM-46MUI 30.7
GTEX-QDT8-0626-SM-48TYW 30.4
GTEX-X4EP-2926-SM-3P5YQ 30.0
GTEX-U3ZN-1926-SM-4DXSG 29.8
GTEX-UJHI-1426-SM-3DB9C 29.8
GTEX-14AS3-1626-SM-5S2OY 29.6
GTEX-ZZPU-0626-SM-5E43T 29.4
GTEX-WXYG-2226-SM-4E3IM 28.8
GTEX-ZV7C-1826-SM-5NQ83 28.5
GTEX-RWS6-1926-SM-47JXY 28.5
GTEX-13W3W-1226-SM-5LU4H 28.1
GTEX-ZAJG-0626-SM-5HL8X 27.7
GTEX-133LE-1726-SM-5K7VQ 27.6
GTEX-13O3P-0826-SM-5L3DH 27.4
GTEX-1192X-2326-SM-5987X 27.1
GTEX-S4UY-0726-SM-4AD6X 27.1
GTEX-11EI6-0626-SM-5985T 26.9
GTEX-11P81-1926-SM-5BC53 26.8
GTEX-ZEX8-2226-SM-57WC6 26.7
GTEX-13D11-1026-SM-5IJFB 26.4
GTEX-XMD1-0826-SM-4AT52 26.2
GTEX-S4P3-1326-SM-4AD6V 25.7
GTEX-TML8-1226-SM-32QON 25.4
GTEX-13FHO-0826-SM-5L3E8 25.0
GTEX-TMMY-0726-SM-33HBE 24.6
GTEX-139TU-0626-SM-5KM3X 24.1
GTEX-132Q8-1426-SM-5EGK7 24.0
GTEX-T2YK-2226-SM-32QPT 23.7
GTEX-Y5V5-2126-SM-4WWFO 23.3
GTEX-XUJ4-1926-SM-4BOOV 23.3
GTEX-T6MO-0326-SM-32QOK 22.6
GTEX-SE5C-2126-SM-4BRUJ 22.3
GTEX-11LCK-2426-SM-5HL5F 21.5
GTEX-Y8LW-1626-SM-5IFHX 21.4
GTEX-WRHU-0326-SM-3MJFY 21.1
GTEX-ZTTD-1026-SM-51MRD 21.0
GTEX-XUW1-2326-SM-4BOO5 20.9
GTEX-1314G-1226-SM-5BC6D 20.5
GTEX-11I78-2226-SM-5PNYA 19.3
GTEX-VJWN-0726-SM-3GIJ8 18.3
GTEX-145MO-0826-SM-5NQBL 18.0
GTEX-13NZ8-0126-SM-5IJCT 17.9
GTEX-XMD2-0926-SM-4WWEF 17.7
GTEX-1313W-0826-SM-5EQ4T 17.4
GTEX-1122O-1226-SM-5H113 17.4
GTEX-WI4N-1426-SM-3LK7H 16.5
GTEX-Y114-2026-SM-4TT7L 16.3
GTEX-ZF3C-2326-SM-5S2MZ 16.2
GTEX-13113-1726-SM-5GCOO 15.8
GTEX-ZVZQ-0826-SM-51MRF 15.5
GTEX-146FH-0826-SM-5SI8T 15.2
GTEX-XYKS-1326-SM-4BRUN 15.1
GTEX-X261-0626-SM-3NMD9 15.0
GTEX-Y3I4-1526-SM-4TT7K 15.0
GTEX-QVJO-1826-SM-447C9 14.8
GTEX-1117F-2826-SM-5GZXL 14.7
GTEX-ZYWO-2326-SM-5GZY4 14.6
GTEX-13O3O-0826-SM-5K7WE 14.4
GTEX-1211K-1926-SM-5EQLB 14.3
GTEX-W5X1-2326-SM-3GIL6 14.0
GTEX-YB5K-1626-SM-5IFIN 13.9
GTEX-ZVT4-1026-SM-57WC4 13.7
GTEX-Y5LM-1726-SM-4VDSX 13.6
GTEX-R53T-1526-SM-48FEK 12.9
GTEX-12WSK-2226-SM-5GCO5 12.6
GTEX-12WSN-1326-SM-5GCNT 12.4
GTEX-11EQ9-1826-SM-5Q5AJ 11.9
GTEX-11NSD-0926-SM-5N9DR 11.8
GTEX-144GL-2026-SM-5LU3O 11.2
GTEX-WOFL-0826-SM-3MJG1 10.8
GTEX-ZPIC-1126-SM-5BC7F 10.3
GTEX-S33H-0326-SM-4AD6N 9.9
GTEX-145MN-1926-SM-5SIAI 9.8
GTEX-13OW8-0226-SM-5K7UP 9.8
GTEX-11OF3-1926-SM-59889 9.8
GTEX-132NY-0826-SM-5K7Y7 9.8
GTEX-13O3Q-2226-SM-5KM4O 9.2
GTEX-XV7Q-2326-SM-4BRVZ 8.5
GTEX-YJ8O-2226-SM-5IFHW 8.3
GTEX-ZYW4-0826-SM-5GIDG 8.2
GTEX-11NV4-2026-SM-5N9DG 7.9
GTEX-XQ3S-1326-SM-4BOPQ 7.8
GTEX-13S86-1226-SM-5S2OA 7.7
GTEX-ZYFC-0826-SM-5E44K 7.4
GTEX-11ZUS-0826-SM-5FQUY 7.2
GTEX-13W46-0826-SM-5LU3H 7.2
GTEX-ZDTT-2126-SM-5S2OJ 7.2
GTEX-ZV6S-1826-SM-5NQ8D 7.1
GTEX-TKQ2-1826-SM-33HB2 6.8
GTEX-12WSM-1726-SM-5BC6J 6.7
GTEX-132AR-0826-SM-5EGK6 6.7
GTEX-11WQK-2426-SM-5GU5C 6.5
GTEX-ZUA1-1526-SM-59HLS 6.5
GTEX-139T6-1626-SM-5PNYZ 6.5
GTEX-S32W-2026-SM-4AD6E 6.4
GTEX-11DXZ-1926-SM-5GZZL 6.4
GTEX-YFCO-1826-SM-4W1YH 6.3
GTEX-S7SE-0826-SM-4AT4D 6.2
GTEX-WY7C-2726-SM-3NB3P 6.1
GTEX-S4Q7-1126-SM-4AD6R 5.9
GTEX-XQ8I-2426-SM-4WAXY 5.8
GTEX-ZYT6-0126-SM-5E45J 5.7
GTEX-13FTW-1426-SM-5LZWZ 5.7
GTEX-ZDXO-0126-SM-5S2ND 5.7
GTEX-Y5V6-2126-SM-4WWFX 5.6
GTEX-Y8E4-1626-SM-5S2MW 5.6
GTEX-12WSB-0626-SM-59HJO 5.5
GTEX-13N1W-0626-SM-5MR4U 5.2
GTEX-YEC3-1026-SM-5IFI5 5.2
GTEX-11O72-2126-SM-5N9FO 5.2
GTEX-Y9LG-1426-SM-5IFJZ 5.1
GTEX-117YX-1426-SM-5H12H 5.1
GTEX-11GSO-1926-SM-5A5K3 5.1
GTEX-R55D-0826-SM-48FEA 4.9
GTEX-11ONC-2126-SM-5HL6E 4.9
GTEX-ZQUD-1926-SM-51MSA 4.8
GTEX-11DXY-2326-SM-5GICW 4.8
GTEX-X4XY-0926-SM-4E3JD 4.7
GTEX-ZWKS-2826-SM-5NQ74 4.7
GTEX-WFON-1826-SM-3GILG 4.7
GTEX-YB5E-1726-SM-5IFJ3 4.6
GTEX-13O61-1826-SM-5KM4I 4.4
GTEX-RUSQ-2026-SM-4GIAK 4.4
GTEX-ZA64-1526-SM-5CVMD 4.3
GTEX-ZAB4-2526-SM-5HL8M 4.3
GTEX-14E6E-1326-SM-5S2NR 4.1
GTEX-12BJ1-1826-SM-5HL9N 3.9
GTEX-ZDYS-1126-SM-5K7UB 3.8
GTEX-12KS4-0126-SM-5Q5A5 3.6
GTEX-13FTX-1126-SM-5N9EN 3.6
GTEX-11DZ1-0326-SM-5N9BN 3.5
GTEX-QMRM-1626-SM-4R1KV 3.4
GTEX-14753-2426-SM-5LU8U 3.4
GTEX-XMK1-1126-SM-4IHJ8 3.3
GTEX-TKQ1-0226-SM-33HB5 3.3
GTEX-XGQ4-0926-SM-4AT4U 3.3
GTEX-PSDG-1626-SM-48TCQ 2.9
GTEX-REY6-2426-SM-48FF5 2.8
GTEX-11ZTT-2326-SM-5EQLG 2.7
GTEX-ZQG8-0726-SM-5P9H9 2.7
GTEX-11TUW-1826-SM-5BC5D 2.7
GTEX-117XS-1926-SM-5GICO 2.7
GTEX-UTHO-1026-SM-3GAF7 2.6
GTEX-13CF3-2126-SM-5IFJP 2.5
GTEX-ZZ64-1226-SM-5E43R 2.5
GTEX-ZLFU-2126-SM-4WWEV 2.5
GTEX-13PVQ-1026-SM-5KM3M 2.4
GTEX-145ME-1526-SM-5Q5F2 2.3
GTEX-144GM-0926-SM-5O994 2.3
GTEX-U8XE-0826-SM-4E3J1 2.2
GTEX-ZT9W-2026-SM-51MRA 2.1
GTEX-11P82-1326-SM-5HL62 1.4
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

18.3

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 18.3
FF:10080-102A8 77 years, female 18.3

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