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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 86.2
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 94.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 85.3
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 72.4
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 80.0
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 79.0
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 71.1
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 85.6
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 65.8
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 39.6
Min RPKM: 10.8
Std RPKM: 5.9
Median RPKM: 24.1
GTEX-QLQ7-1426-SM-4R1JX
39.6
GTEX-ZDTT-2026-SM-5K7TY
39.2
GTEX-WFON-2026-SM-4LVMW
38.1
GTEX-XBED-2026-SM-4AT5D
38.0
GTEX-13FTW-1326-SM-5LZZD
36.6
GTEX-Y8E4-2226-SM-5LU94
35.8
GTEX-YB5E-1926-SM-5IFIG
34.4
GTEX-QLQW-1026-SM-447A9
34.1
GTEX-O5YT-2126-SM-3MJGD
33.5
GTEX-XPVG-2226-SM-4B65U
33.4
GTEX-13O61-2026-SM-5J2M6
33.2
GTEX-U3ZH-1526-SM-4DXV1
32.9
GTEX-PLZ5-1526-SM-3P5ZX
32.8
GTEX-111CU-1726-SM-5EGHM
32.5
GTEX-QV44-1726-SM-4R1KG
32.5
GTEX-Y9LG-1726-SM-4VBQE
32.2
GTEX-ZDYS-1326-SM-5IJFF
32.1
GTEX-QMRM-1526-SM-4R1K6
32.0
GTEX-NFK9-0126-SM-3LK5H
31.8
GTEX-YEC4-1526-SM-4W1YU
31.4
GTEX-SUCS-1326-SM-4DM5T
31.3
GTEX-XMK1-2026-SM-4B65K
31.1
GTEX-11TT1-2226-SM-5GU6B
30.9
GTEX-TKQ1-0926-SM-4DXU2
30.8
GTEX-ZTX8-1126-SM-51MRM
30.8
GTEX-SNMC-1026-SM-4DM7K
30.6
GTEX-139T6-1226-SM-5IFFC
30.5
GTEX-111YS-2026-SM-5EGGL
30.3
GTEX-S33H-0126-SM-4AD62
30.0
GTEX-XPT6-1626-SM-4B655
30.0
GTEX-S3XE-1526-SM-4AD5A
29.9
GTEX-U3ZM-1626-SM-4DXSK
29.8
GTEX-ZPU1-2126-SM-57WED
29.5
GTEX-ZV7C-2026-SM-5NQ8F
29.3
GTEX-11P7K-1026-SM-5HL6Y
29.3
GTEX-R55C-1426-SM-48FED
29.2
GTEX-S4Q7-1226-SM-4AD5I
29.0
GTEX-QV31-1126-SM-4R1K4
29.0
GTEX-WFG8-1926-SM-4LVM1
28.8
GTEX-P4QS-2126-SM-3NMCF
28.6
GTEX-OIZI-0126-SM-3NB13
28.6
GTEX-OXRL-2126-SM-3NM98
28.5
GTEX-132QS-1226-SM-5P9GD
28.5
GTEX-1339X-1926-SM-5PNVP
28.5
GTEX-1399R-1626-SM-5P9GG
28.4
GTEX-RM2N-1326-SM-48FCW
28.2
GTEX-ZA64-1626-SM-5CVME
28.0
GTEX-ZT9W-2226-SM-57WFU
27.7
GTEX-WHSB-2126-SM-4M1XF
27.7
GTEX-Y5V6-1726-SM-4VDSZ
27.6
GTEX-ZZ64-1126-SM-5GZXY
27.4
GTEX-OIZH-2126-SM-3NB1P
27.3
GTEX-ZAB4-0126-SM-5CVMG
27.1
GTEX-12C56-1426-SM-5FQSW
27.0
GTEX-ZTSS-1526-SM-51MTC
27.0
GTEX-ZVZP-2226-SM-57WBF
26.9
GTEX-145LT-0426-SM-5LUAP
26.9
GTEX-11NSD-1026-SM-5N9BE
26.8
GTEX-XGQ4-2026-SM-4AT6G
26.5
GTEX-YF7O-2026-SM-4W1YE
26.4
GTEX-T8EM-0126-SM-4DM5R
26.3
GTEX-WVLH-2626-SM-4MVNV
26.1
GTEX-YFCO-1726-SM-4W21S
26.1
GTEX-11EQ9-1926-SM-5PNVV
26.0
GTEX-Q2AH-1526-SM-48TZG
25.9
GTEX-YJ89-0626-SM-4TT3Z
25.9
GTEX-WOFM-1126-SM-4OOSB
25.8
GTEX-ZUA1-2726-SM-59HLJ
25.8
GTEX-11P82-1526-SM-5BC5M
25.7
GTEX-147JS-0126-SM-5S2TW
25.7
GTEX-OOBJ-2126-SM-3NB1N
25.5
GTEX-VJYA-1426-SM-4KL1Y
25.0
GTEX-S7SE-0326-SM-4AT5Q
25.0
GTEX-WZTO-0326-SM-4PQYZ
24.9
GTEX-TKQ2-1526-SM-4DXUN
24.9
GTEX-13OW6-0126-SM-5IJGM
24.9
GTEX-11ONC-2226-SM-5HL6D
24.8
GTEX-Q2AI-1226-SM-48U14
24.7
GTEX-14A6H-2326-SM-5Q5B5
24.7
GTEX-1212Z-0326-SM-5FQSJ
24.6
GTEX-13O1R-0726-SM-5IJEI
24.5
GTEX-13O21-1226-SM-5J2MK
24.4
GTEX-U4B1-1526-SM-4DXSL
24.4
GTEX-R55D-0126-SM-48FEL
24.3
GTEX-UPJH-0126-SM-4IHLL
24.3
GTEX-11EI6-2226-SM-5EGJM
24.1
GTEX-ZT9X-1426-SM-5DUX1
24.1
GTEX-RWSA-2426-SM-47JXR
23.9
GTEX-144GN-1626-SM-5Q5BU
23.9
GTEX-12ZZY-0126-SM-5LZV2
23.6
GTEX-X3Y1-2626-SM-4PQZI
23.6
GTEX-147F4-0626-SM-5LUAK
23.5
GTEX-S95S-1126-SM-4B64E
23.4
GTEX-145MH-2326-SM-5O9AW
23.4
GTEX-14753-0626-SM-5Q5CY
23.2
GTEX-144GM-0426-SM-5Q5C8
22.8
GTEX-SNOS-1126-SM-4DM67
22.8
GTEX-YEC3-1726-SM-5IFIK
22.7
GTEX-13112-0226-SM-5P9IV
22.4
GTEX-11WQK-2826-SM-5EQKH
22.3
GTEX-OOBK-2126-SM-3LK5T
22.1
GTEX-PW2O-1426-SM-48TCD
21.9
GTEX-U8XE-0126-SM-4E3I3
21.8
GTEX-13NZB-2026-SM-5MR4M
21.8
GTEX-T5JC-0726-SM-4DM55
21.7
GTEX-117XS-2026-SM-5GID1
21.6
GTEX-139TT-2226-SM-5LZWO
21.4
GTEX-REY6-0126-SM-48FDT
21.4
GTEX-11DXZ-2126-SM-59881
21.3
GTEX-XBEC-0126-SM-4GIDT
21.2
GTEX-13NYB-2226-SM-5MR58
21.2
GTEX-ZVTK-0126-SM-57WDG
21.0
GTEX-ZYFC-0126-SM-5GIEH
21.0
GTEX-P4QR-0226-SM-3NMCH
20.9
GTEX-145MO-0126-SM-5S2QU
20.6
GTEX-13111-1526-SM-5EGJX
20.6
GTEX-RUSQ-2126-SM-47JXK
20.6
GTEX-X5EB-2026-SM-4E3KA
20.3
GTEX-OHPM-2126-SM-3LK75
20.1
GTEX-12WSI-2126-SM-5GCMV
20.1
GTEX-139TS-1726-SM-5IJG5
20.0
GTEX-V955-1926-SM-4KL1L
19.9
GTEX-13VXU-0726-SM-5J2O7
19.8
GTEX-144GL-0726-SM-5LU4P
19.7
GTEX-11NUK-2626-SM-5A5MB
19.6
GTEX-131XE-0426-SM-5IJF4
19.6
GTEX-N7MS-0126-SM-3TW8O
19.5
GTEX-1399Q-2826-SM-5IJEZ
19.4
GTEX-11TUW-2226-SM-5EQL9
19.4
GTEX-13OVL-0426-SM-5IFG6
19.4
GTEX-Y111-2426-SM-4TT23
19.3
GTEX-XLM4-1526-SM-4AT6D
19.3
GTEX-V1D1-2126-SM-4JBH4
19.3
GTEX-RN64-2326-SM-48FDW
19.2
GTEX-11GS4-2026-SM-5N9CP
18.8
GTEX-13FLW-2126-SM-5N9FD
18.4
GTEX-11LCK-2326-SM-5HL53
18.3
GTEX-117YW-1526-SM-5EGGP
18.3
GTEX-ZAB5-2426-SM-5CVMW
18.2
GTEX-ZQUD-2026-SM-51MSM
18.1
GTEX-13N1W-2626-SM-5IJEP
18.0
GTEX-13NZA-2526-SM-5IJFX
18.0
GTEX-U8T8-1126-SM-4DXUE
17.9
GTEX-T6MN-2026-SM-4DM7L
17.8
GTEX-13OVH-0726-SM-5N9BU
17.8
GTEX-ZYT6-2726-SM-5GICP
17.8
GTEX-WK11-0326-SM-4OOS6
17.7
GTEX-14ABY-0626-SM-5Q5C9
17.5
GTEX-12696-0226-SM-5EGL3
17.4
GTEX-13OW5-2526-SM-5L3I1
17.2
GTEX-13N2G-0126-SM-5N9DV
17.0
GTEX-11OF3-1826-SM-5987N
16.9
GTEX-13FHP-2826-SM-5IJFW
16.8
GTEX-QEG4-0126-SM-48TZE
16.7
GTEX-111VG-1926-SM-5GIDO
16.7
GTEX-11O72-0726-SM-5P9GO
16.5
GTEX-XQ3S-2726-SM-4BOP2
16.4
GTEX-WH7G-1926-SM-4LVMM
16.3
GTEX-X261-2326-SM-4PQYU
16.0
GTEX-XAJ8-1326-SM-47JYT
15.9
GTEX-QEG5-0126-SM-4R1JR
15.9
GTEX-111FC-1926-SM-5GZYC
15.6
GTEX-12WSM-1326-SM-5GCP9
15.4
GTEX-11ZUS-2726-SM-5FQUA
15.0
GTEX-R55E-0726-SM-48FCZ
14.8
GTEX-12WSH-0326-SM-5GCNH
14.3
GTEX-S7PM-0626-SM-4AD4Q
14.0
GTEX-11EQ8-1426-SM-5EGJR
13.9
GTEX-12WSL-2326-SM-5DUXQ
13.8
GTEX-11WQC-2326-SM-5EQKE
13.4
GTEX-11NV4-1726-SM-5N9FC
13.0
GTEX-Z93S-1726-SM-5HL8G
10.8
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.