The RNA section presents RNA-seq data from eleven cell lines. The table displays FPKM values (number of Fragments per Kilobase Gene model and Million reads) obtained from paired-end sequencing of the cell lines A-431, A-549, CACO-2, HEK 293, HeLA, Hep-G2, MCF-7, PC-3, RT-4, U-2 OS and U-251 MG using the Illumina HiSeq 2000 system. FPKM values are used to estimate the transcript abundance of each gene in each of the cell lines. The expression levels are also reported as high, medium, low or not detected. More detailed information about the method and annotation can be found here.
RNA evidence
High
Cell line
Description
Origin
FPKM
Abundance level
A-431
epidermoid carcinoma cell line
skin
13.7
Medium
A-549
lung carcinoma cell line
lung
8.8
Medium
CACO-2
colon adenocarcinoma cell line
colon
15.5
Medium
HEK 293
embryonal kidney cell line
embryonal kidney
12.0
Medium
HeLa
cervical epithelial adenocarcinoma cell line
cervix
4.7
Low
Hep-G2
hepatocellular carcinoma cell line
liver
9.1
Medium
MCF-7
metastatic breast adenocarcinoma cell line
pleural effusion
25.3
High
PC-3
prostate adenocarcinoma cell line
bone marrow
17.5
Medium
RT-4
urinary bladder transitional cell carcinoma cell line
