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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 280.0
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 233.2
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 129.8
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 341.0
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 228.8
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 260.8
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 371.2
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 353.1
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 363.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 435.5
Min RPKM: 51.2
Std RPKM: 70.9
Median RPKM: 219.3
GTEX-S7PM-0626-SM-4AD4Q
435.5
GTEX-117YW-1526-SM-5EGGP
416.7
GTEX-11EQ9-1926-SM-5PNVV
405.2
GTEX-13OVL-0426-SM-5IFG6
357.9
GTEX-11WQC-2326-SM-5EQKE
351.4
GTEX-QEG4-0126-SM-48TZE
348.9
GTEX-14ABY-0626-SM-5Q5C9
338.8
GTEX-117XS-2026-SM-5GID1
337.0
GTEX-Y111-2426-SM-4TT23
334.9
GTEX-OXRL-2126-SM-3NM98
332.7
GTEX-111FC-1926-SM-5GZYC
329.2
GTEX-S4Q7-1226-SM-4AD5I
327.0
GTEX-REY6-0126-SM-48FDT
320.7
GTEX-R55D-0126-SM-48FEL
320.6
GTEX-12WSH-0326-SM-5GCNH
318.7
GTEX-N7MS-0126-SM-3TW8O
316.0
GTEX-T6MN-2026-SM-4DM7L
315.5
GTEX-12ZZY-0126-SM-5LZV2
312.9
GTEX-OIZH-2126-SM-3NB1P
311.1
GTEX-WH7G-1926-SM-4LVMM
309.6
GTEX-11TT1-2226-SM-5GU6B
305.4
GTEX-WHSB-2126-SM-4M1XF
304.8
GTEX-12696-0226-SM-5EGL3
304.6
GTEX-ZYT6-2726-SM-5GICP
296.2
GTEX-ZPU1-2126-SM-57WED
295.8
GTEX-XAJ8-1326-SM-47JYT
295.0
GTEX-144GL-0726-SM-5LU4P
294.9
GTEX-V1D1-2126-SM-4JBH4
294.5
GTEX-QEG5-0126-SM-4R1JR
293.2
GTEX-13FHP-2826-SM-5IJFW
291.7
GTEX-ZUA1-2726-SM-59HLJ
290.4
GTEX-RUSQ-2126-SM-47JXK
290.3
GTEX-WK11-0326-SM-4OOS6
288.6
GTEX-XLM4-1526-SM-4AT6D
287.8
GTEX-Q2AI-1226-SM-48U14
286.8
GTEX-13NZA-2526-SM-5IJFX
286.5
GTEX-11OF3-1826-SM-5987N
285.1
GTEX-11DXZ-2126-SM-59881
277.1
GTEX-11NV4-1726-SM-5N9FC
275.7
GTEX-12WSL-2326-SM-5DUXQ
274.8
GTEX-11ZUS-2726-SM-5FQUA
273.3
GTEX-ZVTK-0126-SM-57WDG
263.7
GTEX-12WSI-2126-SM-5GCMV
262.8
GTEX-13111-1526-SM-5EGJX
262.2
GTEX-139TS-1726-SM-5IJG5
260.5
GTEX-145MO-0126-SM-5S2QU
260.4
GTEX-144GM-0426-SM-5Q5C8
254.2
GTEX-13112-0226-SM-5P9IV
252.8
GTEX-11EQ8-1426-SM-5EGJR
252.6
GTEX-ZTSS-1526-SM-51MTC
251.7
GTEX-111CU-1726-SM-5EGHM
250.1
GTEX-11EI6-2226-SM-5EGJM
249.1
GTEX-S7SE-0326-SM-4AT5Q
249.0
GTEX-S95S-1126-SM-4B64E
248.5
GTEX-13VXU-0726-SM-5J2O7
247.8
GTEX-TKQ1-0926-SM-4DXU2
245.5
GTEX-XGQ4-2026-SM-4AT6G
244.7
GTEX-13OW5-2526-SM-5L3I1
243.3
GTEX-14753-0626-SM-5Q5CY
241.5
GTEX-T8EM-0126-SM-4DM5R
240.9
GTEX-OIZI-0126-SM-3NB13
240.8
GTEX-YEC3-1726-SM-5IFIK
240.4
GTEX-1212Z-0326-SM-5FQSJ
239.5
GTEX-13N1W-2626-SM-5IJEP
239.5
GTEX-12C56-1426-SM-5FQSW
237.9
GTEX-PW2O-1426-SM-48TCD
237.8
GTEX-U8T8-1126-SM-4DXUE
236.7
GTEX-T5JC-0726-SM-4DM55
236.4
GTEX-Z93S-1726-SM-5HL8G
235.6
GTEX-V955-1926-SM-4KL1L
235.3
GTEX-ZQUD-2026-SM-51MSM
234.5
GTEX-UPJH-0126-SM-4IHLL
234.0
GTEX-11O72-0726-SM-5P9GO
231.1
GTEX-13FTW-1326-SM-5LZZD
230.6
GTEX-11GS4-2026-SM-5N9CP
229.8
GTEX-ZDYS-1326-SM-5IJFF
229.0
GTEX-13O21-1226-SM-5J2MK
228.7
GTEX-TKQ2-1526-SM-4DXUN
227.5
GTEX-U8XE-0126-SM-4E3I3
224.8
GTEX-111VG-1926-SM-5GIDO
224.2
GTEX-11NSD-1026-SM-5N9BE
223.2
GTEX-ZZ64-1126-SM-5GZXY
222.2
GTEX-QV44-1726-SM-4R1KG
222.0
GTEX-11TUW-2226-SM-5EQL9
220.2
GTEX-1339X-1926-SM-5PNVP
219.7
GTEX-144GN-1626-SM-5Q5BU
219.3
GTEX-X5EB-2026-SM-4E3KA
219.2
GTEX-OOBK-2126-SM-3LK5T
219.2
GTEX-139TT-2226-SM-5LZWO
218.7
GTEX-ZA64-1626-SM-5CVME
218.5
GTEX-XQ3S-2726-SM-4BOP2
218.5
GTEX-OOBJ-2126-SM-3NB1N
218.3
GTEX-ZV7C-2026-SM-5NQ8F
216.7
GTEX-13NZB-2026-SM-5MR4M
215.7
GTEX-XBEC-0126-SM-4GIDT
214.2
GTEX-ZVZP-2226-SM-57WBF
213.4
GTEX-P4QS-2126-SM-3NMCF
212.5
GTEX-WZTO-0326-SM-4PQYZ
212.1
GTEX-SNOS-1126-SM-4DM67
210.7
GTEX-OHPM-2126-SM-3LK75
208.1
GTEX-SNMC-1026-SM-4DM7K
203.2
GTEX-13FLW-2126-SM-5N9FD
202.3
GTEX-ZT9W-2226-SM-57WFU
200.3
GTEX-132QS-1226-SM-5P9GD
199.4
GTEX-U4B1-1526-SM-4DXSL
199.3
GTEX-X3Y1-2626-SM-4PQZI
198.1
GTEX-11NUK-2626-SM-5A5MB
194.2
GTEX-WOFM-1126-SM-4OOSB
194.1
GTEX-11LCK-2326-SM-5HL53
190.7
GTEX-147JS-0126-SM-5S2TW
189.7
GTEX-111YS-2026-SM-5EGGL
189.1
GTEX-11P82-1526-SM-5BC5M
188.1
GTEX-QLQW-1026-SM-447A9
187.6
GTEX-11WQK-2826-SM-5EQKH
186.4
GTEX-R55C-1426-SM-48FED
183.7
GTEX-Y9LG-1726-SM-4VBQE
182.6
GTEX-13N2G-0126-SM-5N9DV
182.2
GTEX-139T6-1226-SM-5IFFC
181.1
GTEX-ZAB5-2426-SM-5CVMW
180.1
GTEX-RWSA-2426-SM-47JXR
178.2
GTEX-Y8E4-2226-SM-5LU94
177.9
GTEX-X261-2326-SM-4PQYU
175.6
GTEX-13O61-2026-SM-5J2M6
175.3
GTEX-145MH-2326-SM-5O9AW
174.0
GTEX-NFK9-0126-SM-3LK5H
173.9
GTEX-1399Q-2826-SM-5IJEZ
173.8
GTEX-QV31-1126-SM-4R1K4
172.9
GTEX-VJYA-1426-SM-4KL1Y
172.6
GTEX-11P7K-1026-SM-5HL6Y
172.1
GTEX-13NYB-2226-SM-5MR58
171.0
GTEX-YB5E-1926-SM-5IFIG
169.6
GTEX-P4QR-0226-SM-3NMCH
168.9
GTEX-13O1R-0726-SM-5IJEI
163.7
GTEX-U3ZM-1626-SM-4DXSK
162.9
GTEX-XBED-2026-SM-4AT5D
161.8
GTEX-145LT-0426-SM-5LUAP
158.2
GTEX-Q2AH-1526-SM-48TZG
157.8
GTEX-ZYFC-0126-SM-5GIEH
157.5
GTEX-YEC4-1526-SM-4W1YU
154.4
GTEX-SUCS-1326-SM-4DM5T
153.6
GTEX-XPVG-2226-SM-4B65U
152.3
GTEX-QLQ7-1426-SM-4R1JX
151.4
GTEX-R55E-0726-SM-48FCZ
149.7
GTEX-131XE-0426-SM-5IJF4
149.0
GTEX-12WSM-1326-SM-5GCP9
145.7
GTEX-Y5V6-1726-SM-4VDSZ
144.9
GTEX-YF7O-2026-SM-4W1YE
142.9
GTEX-WFON-2026-SM-4LVMW
137.3
GTEX-QMRM-1526-SM-4R1K6
136.2
GTEX-WVLH-2626-SM-4MVNV
135.5
GTEX-RM2N-1326-SM-48FCW
135.0
GTEX-XMK1-2026-SM-4B65K
130.9
GTEX-13OVH-0726-SM-5N9BU
128.5
GTEX-XPT6-1626-SM-4B655
127.3
GTEX-WFG8-1926-SM-4LVM1
126.6
GTEX-11ONC-2226-SM-5HL6D
126.3
GTEX-S3XE-1526-SM-4AD5A
124.7
GTEX-147F4-0626-SM-5LUAK
119.1
GTEX-YFCO-1726-SM-4W21S
118.8
GTEX-RN64-2326-SM-48FDW
114.5
GTEX-U3ZH-1526-SM-4DXV1
113.9
GTEX-ZAB4-0126-SM-5CVMG
112.8
GTEX-ZTX8-1126-SM-51MRM
112.7
GTEX-13OW6-0126-SM-5IJGM
110.7
GTEX-1399R-1626-SM-5P9GG
110.7
GTEX-S33H-0126-SM-4AD62
107.6
GTEX-YJ89-0626-SM-4TT3Z
104.6
GTEX-ZT9X-1426-SM-5DUX1
93.9
GTEX-PLZ5-1526-SM-3P5ZX
93.0
GTEX-O5YT-2126-SM-3MJGD
72.3
GTEX-14A6H-2326-SM-5Q5B5
62.3
GTEX-ZDTT-2026-SM-5K7TY
51.2
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.