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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 101.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 71.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 44.4
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 88.9
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 121.4
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 74.1
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 6.7
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 29.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 11.5
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 226.8
Min RPKM: 41.7
Std RPKM: 39.2
Median RPKM: 139.7
GTEX-Y111-2426-SM-4TT23
226.8
GTEX-T6MN-2026-SM-4DM7L
209.5
GTEX-QEG4-0126-SM-48TZE
209.3
GTEX-11WQC-2326-SM-5EQKE
209.2
GTEX-Z93S-1726-SM-5HL8G
204.8
GTEX-13FHP-2826-SM-5IJFW
201.8
GTEX-OHPM-2126-SM-3LK75
201.0
GTEX-11ZUS-2726-SM-5FQUA
198.2
GTEX-SNOS-1126-SM-4DM67
195.5
GTEX-WK11-0326-SM-4OOS6
195.0
GTEX-N7MS-0126-SM-3TW8O
194.4
GTEX-OOBK-2126-SM-3LK5T
189.3
GTEX-QV31-1126-SM-4R1K4
188.5
GTEX-YEC3-1726-SM-5IFIK
187.3
GTEX-12WSL-2326-SM-5DUXQ
186.0
GTEX-XAJ8-1326-SM-47JYT
182.1
GTEX-14ABY-0626-SM-5Q5C9
180.6
GTEX-XLM4-1526-SM-4AT6D
180.2
GTEX-13OW5-2526-SM-5L3I1
180.1
GTEX-11EQ8-1426-SM-5EGJR
177.2
GTEX-ZTSS-1526-SM-51MTC
177.2
GTEX-S7PM-0626-SM-4AD4Q
177.0
GTEX-QEG5-0126-SM-4R1JR
176.6
GTEX-UPJH-0126-SM-4IHLL
176.2
GTEX-117YW-1526-SM-5EGGP
175.6
GTEX-S4Q7-1226-SM-4AD5I
175.1
GTEX-139TS-1726-SM-5IJG5
174.1
GTEX-11NV4-1726-SM-5N9FC
173.6
GTEX-REY6-0126-SM-48FDT
172.0
GTEX-11DXZ-2126-SM-59881
171.5
GTEX-ZQUD-2026-SM-51MSM
169.2
GTEX-Q2AI-1226-SM-48U14
168.6
GTEX-11GS4-2026-SM-5N9CP
167.3
GTEX-13O1R-0726-SM-5IJEI
166.7
GTEX-U8T8-1126-SM-4DXUE
165.1
GTEX-U8XE-0126-SM-4E3I3
164.3
GTEX-11O72-0726-SM-5P9GO
164.2
GTEX-13112-0226-SM-5P9IV
163.6
GTEX-ZAB5-2426-SM-5CVMW
163.5
GTEX-144GL-0726-SM-5LU4P
163.0
GTEX-PW2O-1426-SM-48TCD
162.9
GTEX-11TUW-2226-SM-5EQL9
162.4
GTEX-X5EB-2026-SM-4E3KA
162.3
GTEX-TKQ2-1526-SM-4DXUN
161.9
GTEX-ZT9X-1426-SM-5DUX1
160.4
GTEX-S95S-1126-SM-4B64E
159.5
GTEX-WOFM-1126-SM-4OOSB
159.1
GTEX-12WSH-0326-SM-5GCNH
159.0
GTEX-13VXU-0726-SM-5J2O7
158.9
GTEX-11OF3-1826-SM-5987N
157.6
GTEX-Y5V6-1726-SM-4VDSZ
157.3
GTEX-13N1W-2626-SM-5IJEP
157.1
GTEX-131XE-0426-SM-5IJF4
156.8
GTEX-XQ3S-2726-SM-4BOP2
156.5
GTEX-117XS-2026-SM-5GID1
155.8
GTEX-ZVTK-0126-SM-57WDG
154.8
GTEX-145MO-0126-SM-5S2QU
154.6
GTEX-OXRL-2126-SM-3NM98
153.9
GTEX-1399Q-2826-SM-5IJEZ
151.8
GTEX-12696-0226-SM-5EGL3
149.5
GTEX-WH7G-1926-SM-4LVMM
149.4
GTEX-11NUK-2626-SM-5A5MB
149.2
GTEX-144GM-0426-SM-5Q5C8
149.0
GTEX-11LCK-2326-SM-5HL53
148.2
GTEX-V955-1926-SM-4KL1L
148.0
GTEX-111CU-1726-SM-5EGHM
147.6
GTEX-P4QS-2126-SM-3NMCF
146.8
GTEX-13NZB-2026-SM-5MR4M
146.7
GTEX-OIZH-2126-SM-3NB1P
146.7
GTEX-11EQ9-1926-SM-5PNVV
146.0
GTEX-U3ZM-1626-SM-4DXSK
144.8
GTEX-ZVZP-2226-SM-57WBF
144.8
GTEX-ZYT6-2726-SM-5GICP
144.4
GTEX-13OVL-0426-SM-5IFG6
143.5
GTEX-13FLW-2126-SM-5N9FD
143.2
GTEX-13NZA-2526-SM-5IJFX
142.9
GTEX-YF7O-2026-SM-4W1YE
142.6
GTEX-OOBJ-2126-SM-3NB1N
142.0
GTEX-ZA64-1626-SM-5CVME
141.8
GTEX-12ZZY-0126-SM-5LZV2
141.7
GTEX-13N2G-0126-SM-5N9DV
141.5
GTEX-11EI6-2226-SM-5EGJM
141.4
GTEX-XGQ4-2026-SM-4AT6G
141.2
GTEX-139TT-2226-SM-5LZWO
140.8
GTEX-ZYFC-0126-SM-5GIEH
140.6
GTEX-ZPU1-2126-SM-57WED
139.9
GTEX-11NSD-1026-SM-5N9BE
139.5
GTEX-X3Y1-2626-SM-4PQZI
139.5
GTEX-T8EM-0126-SM-4DM5R
138.9
GTEX-U4B1-1526-SM-4DXSL
136.2
GTEX-XBEC-0126-SM-4GIDT
136.1
GTEX-RUSQ-2126-SM-47JXK
135.6
GTEX-111YS-2026-SM-5EGGL
135.0
GTEX-T5JC-0726-SM-4DM55
134.6
GTEX-ZZ64-1126-SM-5GZXY
133.8
GTEX-V1D1-2126-SM-4JBH4
133.3
GTEX-Q2AH-1526-SM-48TZG
132.2
GTEX-ZV7C-2026-SM-5NQ8F
131.5
GTEX-111FC-1926-SM-5GZYC
130.4
GTEX-12WSI-2126-SM-5GCMV
129.6
GTEX-11P82-1526-SM-5BC5M
128.9
GTEX-P4QR-0226-SM-3NMCH
128.5
GTEX-WZTO-0326-SM-4PQYZ
128.1
GTEX-12C56-1426-SM-5FQSW
126.9
GTEX-ZT9W-2226-SM-57WFU
126.0
GTEX-TKQ1-0926-SM-4DXU2
125.8
GTEX-ZDYS-1326-SM-5IJFF
124.1
GTEX-R55D-0126-SM-48FEL
123.7
GTEX-YEC4-1526-SM-4W1YU
123.6
GTEX-13111-1526-SM-5EGJX
122.1
GTEX-XBED-2026-SM-4AT5D
122.0
GTEX-ZUA1-2726-SM-59HLJ
121.9
GTEX-R55C-1426-SM-48FED
121.7
GTEX-RWSA-2426-SM-47JXR
120.9
GTEX-SUCS-1326-SM-4DM5T
119.8
GTEX-1339X-1926-SM-5PNVP
119.1
GTEX-132QS-1226-SM-5P9GD
117.1
GTEX-QMRM-1526-SM-4R1K6
115.0
GTEX-WHSB-2126-SM-4M1XF
114.6
GTEX-SNMC-1026-SM-4DM7K
113.0
GTEX-S7SE-0326-SM-4AT5Q
112.5
GTEX-111VG-1926-SM-5GIDO
112.3
GTEX-YFCO-1726-SM-4W21S
111.9
GTEX-XMK1-2026-SM-4B65K
111.8
GTEX-1212Z-0326-SM-5FQSJ
111.7
GTEX-WVLH-2626-SM-4MVNV
110.9
GTEX-145MH-2326-SM-5O9AW
110.5
GTEX-RM2N-1326-SM-48FCW
109.8
GTEX-S3XE-1526-SM-4AD5A
109.7
GTEX-R55E-0726-SM-48FCZ
107.9
GTEX-14753-0626-SM-5Q5CY
107.7
GTEX-13NYB-2226-SM-5MR58
107.6
GTEX-13OVH-0726-SM-5N9BU
105.3
GTEX-144GN-1626-SM-5Q5BU
104.9
GTEX-13FTW-1326-SM-5LZZD
104.4
GTEX-139T6-1226-SM-5IFFC
104.3
GTEX-13O61-2026-SM-5J2M6
102.4
GTEX-147JS-0126-SM-5S2TW
101.0
GTEX-1399R-1626-SM-5P9GG
98.5
GTEX-11WQK-2826-SM-5EQKH
98.5
GTEX-13O21-1226-SM-5J2MK
98.2
GTEX-WFG8-1926-SM-4LVM1
95.8
GTEX-QLQW-1026-SM-447A9
93.9
GTEX-XPT6-1626-SM-4B655
92.8
GTEX-QV44-1726-SM-4R1KG
92.7
GTEX-NFK9-0126-SM-3LK5H
91.7
GTEX-YJ89-0626-SM-4TT3Z
88.1
GTEX-13OW6-0126-SM-5IJGM
87.8
GTEX-PLZ5-1526-SM-3P5ZX
86.9
GTEX-VJYA-1426-SM-4KL1Y
86.7
GTEX-YB5E-1926-SM-5IFIG
86.5
GTEX-145LT-0426-SM-5LUAP
86.4
GTEX-11TT1-2226-SM-5GU6B
84.5
GTEX-X261-2326-SM-4PQYU
80.6
GTEX-XPVG-2226-SM-4B65U
77.7
GTEX-WFON-2026-SM-4LVMW
74.5
GTEX-QLQ7-1426-SM-4R1JX
74.5
GTEX-12WSM-1326-SM-5GCP9
73.1
GTEX-ZTX8-1126-SM-51MRM
71.9
GTEX-OIZI-0126-SM-3NB13
66.2
GTEX-11P7K-1026-SM-5HL6Y
66.2
GTEX-S33H-0126-SM-4AD62
63.9
GTEX-Y8E4-2226-SM-5LU94
62.5
GTEX-O5YT-2126-SM-3MJGD
60.3
GTEX-Y9LG-1726-SM-4VBQE
57.3
GTEX-147F4-0626-SM-5LUAK
54.3
GTEX-U3ZH-1526-SM-4DXV1
51.1
GTEX-14A6H-2326-SM-5Q5B5
50.3
GTEX-11ONC-2226-SM-5HL6D
47.1
GTEX-RN64-2326-SM-48FDW
46.8
GTEX-ZDTT-2026-SM-5K7TY
46.7
GTEX-ZAB4-0126-SM-5CVMG
41.7
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.